New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1695585 =	45 (0.800)	6 (0.110)	4/240	NT	13.1%	coding (262/648 nt)	PP_1491	CheW domain‑containing protein
	?	NC_002947	1695623 =	38 (0.720)					coding (300/648 nt)	PP_1491	CheW domain‑containing protein

GCGCTGGTGCAGGAGCACCAGGCTGCAGCGGTGCAGCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGCGATGCCACG  >  NC_002947/1695480‑1695766                                                                                                                                                |                                                                                                                                                 gcgcTGGTGCAGGAGCACCAGGCTGCAGCGGTGCAGCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGcatt                                                                                                                                              >  8:92746/1‑148 (MQ=255)       gTGCAGGAGCACCAGGCTGCAGCGGTGCAGCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGcc                                                                                                                                       <  3:141784/149‑1 (MQ=255)                cACCAGGCTGCAGCGGTGCAGCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAgcg                                                                                                                              >  2:110667/1‑149 (MQ=255)                  ccAGGCTGCAGCGGTGCAGCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCt                                                                                                                            <  6:144196/149‑1 (MQ=255)                   cAGGCTGCAGCGGTGCAGGCGGATGCGGAAAACGCCGGTCGTTCGATGGTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑c                                                                                                                          >  6:93101/1‑149 (MQ=255)                   cAGGCTGCAGCGGTGCAGCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑c                                                                                                                          >  7:211246/1‑149 (MQ=255)                                    gCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACgggg                                                                                                         >  2:292834/1‑149 (MQ=255)                                    gCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACgggg                                                                                                         <  6:281633/149‑1 (MQ=255)                                             ggAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATg                                                                                                >  5:186245/1‑149 (MQ=255)                                                       ggTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGc                                                                                      >  6:168908/1‑149 (MQ=255)                                                               gATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgc                                                                              >  3:34502/1‑149 (MQ=255)                                                               gATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtg                                                                               <  6:89760/148‑1 (MQ=255)                                                                    tgctgTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgccgttc                                                                         <  3:91633/149‑3 (MQ=255)                                                                    ggctgTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCACCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgccgtgc                                                                         <  5:117900/148‑1 (MQ=255)                                                                      ctgTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgccgtgc                                                                         <  5:93101/147‑1 (MQ=255)                                                                         ttCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTc                                                                    >  6:23292/1‑149 (MQ=255)                                                                              tCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTgg                                                               <  5:168908/149‑1 (MQ=255)                                                                                  ggCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCt                                                             <  1:110667/147‑1 (MQ=255)                                                                                  ggCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGa                                                           >  6:183635/1‑149 (MQ=255)                                                                                  ggCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGa                                                           >  3:26582/1‑149 (MQ=255)                                                                                     gAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACtt                                                        >  2:207560/1‑149 (MQ=255)                                                                                             ggtggcgctgggTTCCGCCATGCGGGGCGCAATGGCCCCGTTGGATGCGGTGGATTCATTTCCGCACCAGCGGTCCGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCggg                                                 <  1:292834/147‑1 (MQ=255)                                                                                             gctggcgctggcTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCgggg                                                >  5:298340/1‑149 (MQ=255)                                                                                             gctggcgctggcTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCggg                                                 <  8:213085/148‑1 (MQ=255)                                                                                               tggcgctggcTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTg                                              >  5:360719/1‑149 (MQ=255)                                                                                               tggcgctggcTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTg                                              >  6:131645/1‑149 (MQ=255)                                                                                                ggcgctggcTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTAc                                                                                             <  7:151750/101‑1 (MQ=255)                                                                                                ggcgctggcTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTAc                                                                                             >  8:151750/1‑101 (MQ=255)                                                                                                         tACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCt                                    >  5:230599/1‑149 (MQ=255)                                                                                                         tACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CACGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCt                                    >  4:207220/1‑149 (MQ=255)                                                                                                          accgcctgcaacggggcgatttcggccaggcaggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGcc                                        <  6:155136‑M2/106‑1 (MQ=255)                                                                                                          accgcctgcaacggggcgatttcggccaggcaggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGcc                                        >  5:155136‑M2/39‑144 (MQ=255)                                                                                                          ACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTc                                   <  1:64684‑M1/149‑1 (MQ=255)                                                                                                          ACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTc                                   <  7:243547‑M1/149‑1 (MQ=255)                                                                                                           ccgcctgcaacggggcgatttcggccaggcaggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgccgtgc                                                                         <  8:153024‑M2/73‑1 (MQ=255)                                                                                                           ccgcctgcaacggggcgatttcggccaggcaggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgccgtgc                                                                         <  8:109341‑M2/73‑1 (MQ=255)                                                                                                           ccgcctgcaacggggcgatttcggccaggcaggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgccgtgc                                                                         >  7:109341‑M2/38‑110 (MQ=255)                                                                                                           ccgcctgcaacggggcgatttcggccaggcaggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGgtgccgtgc                                                                         >  7:153024‑M2/38‑110 (MQ=255)                                                                                                           CCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTc                                   >  4:26582‑M1/1‑148 (MQ=255)                                                                                                             GCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCAc                                <  5:74069‑M1/149‑1 (MQ=255)                                                                                                                  CCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGc                           >  3:62338‑M1/1‑149 (MQ=255)                                                                                                                      gCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCaa                         <  5:23292/147‑1 (MQ=255)                                                                                                                       ccGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGc                      <  8:211246/149‑1 (MQ=255)                                                                                                                        cGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCa                     <  6:230599/149‑1 (MQ=255)                                                                                                                            aTCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTACTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAgcg                  >  6:63858/1‑148 (MQ=255)                                                                                                                             tCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGc                           <  1:158661/138‑1 (MQ=255)                                                                                                                             tCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGc                           >  2:158661/1‑138 (MQ=255)                                                                                                                               gCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACg              >  5:267052/1‑149 (MQ=255)                                                                                                                                 cccGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTg                                                                <  6:32446/97‑1 (MQ=255)                                                                                                                                 cccGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTg                                                                >  5:32446/1‑97 (MQ=255)                                                                                                                                  ccGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGc           >  8:71873/1‑149 (MQ=255)                                                                                                                                     ttGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGCGAt        <  7:92746/149‑1 (MQ=255)                                                                                                                                     ttGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGCGAt        <  6:298340/149‑1 (MQ=255)                                                                                                                                         aggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGCGATGCCa    >  6:4805‑M2/8‑149 (MQ=255)                                                                                                                                          ggcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGCGATGCCAc   >  8:338799‑M2/7‑149 (MQ=255)                                                                                                                                           gcggtGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGCGATGCCACg  >  7:72164‑M2/6‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                 GCGCTGGTGCAGGAGCACCAGGCTGCAGCGGTGCAGCCGGATGCGGAAAACACCGGTCGTTCGATGCTGCTGTTCCGTCTGGGCGAAGAGTGGCTGGCGCTGGCTACCGCCTGCCTGGCCGAAATCGCCCCGTTGCAGGCGGTGCATTCATTGCCGCACCAGCGCT‑CGCGGCTGCTGCACGGGGTTGCCAATGTACGCGGTGCGTTGGTGCCGTGCCTGTCCCTGGCTGACTTGCTCGGGGTGCAGGCCGGCTCCACCGAGCAACGCAGCGCACGGGCGATGCCACG  >  NC_002947/1695480‑1695766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.