New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1722035	50 (0.880)	3 (0.050)	3/250	NT	6.0%	coding (668/3066 nt)	PP_1517	RND family transporter
	?	NC_002947	= 1722076	46 (0.840)					coding (709/3066 nt)	PP_1517	RND family transporter

GGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATGCCATTG  >  NC_002947/1721930‑1722217                                                                                                                                                   |                                                                                                                                               ggATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtc                                                                                                                                              <  7:27454‑M2/149‑3 (MQ=255)  gATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGTGCTTGCAACTGCGCGTGAGCGGGCGTTt                                                                                                                                               >  1:25385‑M2/1‑146 (MQ=255)  gATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTt                                                                                                                                               >  4:88658‑M2/1‑146 (MQ=255)  gATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTt                                                                                                                                               >  3:244219‑M2/1‑146 (MQ=255)        gCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAg‑tg                                                                                                                                      >  6:296863/1‑149 (MQ=255)            tCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTc                                                                                                                                    <  6:120934/147‑1 (MQ=255)            tCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCACCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTc                                                                                                                                    <  5:76236/147‑1 (MQ=255)             ccAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAg                                                                                                                                 <  5:60781/149‑1 (MQ=255)               aaCCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCa                                                                                                                               <  5:296863/149‑1 (MQ=255)                  cTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAg                                                                                                                                 >  3:204984/1‑144 (MQ=255)                   tCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGATAG‑TGTCGAGCAGATc                                                                                                                           >  3:198365/1‑149 (MQ=255)                    cAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATcc                                                                                                                          >  2:48080/1‑149 (MQ=255)                     aaGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATcc                                                                                                                          <  8:58363/148‑1 (MQ=255)                           gCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAg                                                                                                                     <  5:116514/147‑1 (MQ=255)                             cACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTcc                                                                                                                 >  7:277399/1‑149 (MQ=255)                              aCCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTccc                                                                                                                >  2:111683/1‑149 (MQ=255)                                 cTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCAt                                                                                                             >  4:218394/1‑149 (MQ=255)                                  tCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCAtt                                                                                                            >  7:195847/1‑149 (MQ=255)                                       gggCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGGTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGt                                                                                                       <  6:41819/147‑1 (MQ=255)                                        tGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAGATGTCGAGCAGATCCGCCAGTTCCCCATTCGCGt                                                                                                       <  1:48080/149‑1 (MQ=255)                                         gCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAAAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTgg                                                                                                     >  6:43447/1‑149 (MQ=255)                                            gCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTcc                                                                                                                 <  1:266332/134‑1 (MQ=255)                                            gCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTcc                                                                                                                 >  2:266332/1‑134 (MQ=255)                                                           gAAGGCGTTGCAAGAACAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGa                                                                                   >  2:235832/1‑149 (MQ=255)                                                              ggCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTg                                                                                <  2:166792/149‑1 (MQ=255)                                                                 gTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTcgcg                                                                                                        <  3:353480/122‑1 (MQ=255)                                                                 gTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTcgcg                                                                                                        >  4:353480/1‑122 (MQ=255)                                                                 gTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTg                                                                             <  8:195847/149‑1 (MQ=255)                                                                    gCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGAt                                                                           <  4:204984/148‑1 (MQ=255)                                                                    gCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGAt                                                                           <  6:246492/148‑1 (MQ=255)                                                                      aaGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAAACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTc                                                                        >  8:98883/1‑149 (MQ=255)                                                                                        gCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGc                                                      <  6:357926/149‑1 (MQ=255)                                                                                         cACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCt                                                     >  2:224072/1‑149 (MQ=255)                                                                                          aCCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCg                                                                                              <  2:277830/107‑1 (MQ=255)                                                                                             gccgGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCaa                                                 <  1:224072/149‑1 (MQ=255)                                                                                                 gTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGAc                                             <  5:43447/149‑1 (MQ=255)                                                                                                 gTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGAc                                             <  3:218394/149‑1 (MQ=255)                                                                                                  tttCTTCGAAACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGAcc                                            <  7:98883/149‑1 (MQ=255)                                                                                                    tcttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGATAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGCGATGTCGCCGAGGTGCACCGTGGCTTCAACGAccc                                           <  4:198365/148‑1 (MQ=255)                                                                                                      ttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtcgaagaaaccggcggtgctcaccgcgttctgctcttgcaacgccttctgcacggcttccagcggcacgccgagggtggccagcttgaggttggacagct                                            <  6:352121‑M2/146‑101 (MQ=255)                                                                                                      ttcGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtcgaagaaaccggcggtgctcaccgcgttctgctcttgcaacgccttctgcacggcttccagcggcacgccgagggtggccagcttgaggttggacagct                                            >  5:352121‑M2/1‑46 (MQ=255)                                                                                                         gagaCGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTtcgaagaaaccggcggtgctcaccgcgttctgctcttgcaacgccttctgcacggcttccagcggcacgccgagggtggccagcttgaggttggacagctcgatc                                       <  3:133914‑M2/148‑106 (MQ=255)                                                                                                            aCGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCAcc                                  <  1:235832/149‑1 (MQ=255)                                                                                                                ccAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACcgcg                               >  5:8963/1‑148 (MQ=255)                                                                                                                 cAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCACCATTCGCGAGGCTGAACGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGAACCACCTGCACCGCGCa                             >  6:259728/1‑149 (MQ=255)                                                                                                                       gcgcTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCt                       >  2:260950/1‑149 (MQ=255)                                                                                                                             gCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGa                                              <  6:338210/120‑1 (MQ=255)                                                                                                                             gCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGa                                              >  5:338210/1‑120 (MQ=255)                                                                                                                                   gcgcGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAg            >  4:83937/1‑148 (MQ=255)                                                                                                                                    cgcgTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGa          >  4:243090/1‑149 (MQ=255)                                                                                                                                       ctcgctgggCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATGc       <  4:51086/143‑1 (MQ=255)                                                                                                                                            cGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATgg                 <  5:65082/134‑1 (MQ=255)                                                                                                                                            cGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATgg                 >  6:65082/1‑134 (MQ=255)                                                                                                                                            cGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCCTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATGCCATTg  <  5:284012/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               GGATCGAGCTGTCCAACCTCAAGCTGGCCACCCTCGGCGTGCCGCTGGAAGCCGTGCAGAAGGCGTTGCAAGAGCAGAACGCGGTGAGCACCGCCGGTTTCTTCGAGACGCCCAGCGAGCGCTTGCAACTGCGCGTGAGCGGGCGTTTCGACAG‑TGTCGAGCAGATCCGCCAGTTCCCCATTCGCGTGGGTGATCGCACCTTCCGGATTGGTGATGTCGCCGAGGTGCACCGTGGCTTCAACGACCCACCTGCACCGCGCATGCGCTTCATGGGCGAGGATGCCATTG  >  NC_002947/1721930‑1722217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.