| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2258059 | NA (NA) | 9 (0.170) | 4/242 | NT | 22.0% | intergenic (+114/‑278) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase |
| ? | NC_002947 | = 2258152 | 34 (0.600) | intergenic (+207/‑185) | PP_1990/asd | transposase/aspartate‑semialdehyde dehydrogenase | |||||
GCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGT > NC_002947/2258007‑2258300 | gCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACACCGGCCTTGCTCCCGGCACGACCGCCCCGAAGGCCCCCAACTGGGGCCACAGCGCATGACGGGCAACCATGCCCGACACCAGCCAAC‑GCAAGGCCagc < 6:332547‑M2/149‑4 (MQ=255) tCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTTC‑GCAAGGCCtgagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgccgc < 4:168395‑M2/149‑54 (MQ=255) gCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCGTC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttt < 3:329923‑M2/149‑58 (MQ=255) ccTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgtttt < 8:31796‑M2/149‑59 (MQ=255) gCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatggga < 8:201204‑M2/133‑47 (MQ=255) gCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatggga > 7:201204‑M2/1‑87 (MQ=255) ccGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCGGGAGCAAGGCCggagtgagggaaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggtt < 8:19395‑M2/148‑65 (MQ=255) cGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCGGGAGCGAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttac < 8:230364‑M2/149‑67 (MQ=255) gCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac < 2:219100/149‑1 (MQ=11) aGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacag < 2:217145/149‑1 (MQ=32) gACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagc > 3:193151/1‑148 (MQ=32) cgcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagc < 1:337817/149‑1 (MQ=37) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac < 5:74080/139‑1 (MQ=11) gcCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaac > 6:74080/1‑139 (MQ=11) ccGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCGGGAGCAAGGCCggagtgagggaaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtt > 7:19395‑M2/1‑70 (MQ=255) gAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaacagcaaca < 1:301287/149‑1 (MQ=38) ccccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcagcaacagcaacagcaa > 5:114279/1‑148 (MQ=39) cccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaac > 7:112888/1‑136 (MQ=34) cccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacagcaac < 8:112888/136‑1 (MQ=34) cccATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAcagcaacagcaacagcaa > 3:265716/1‑147 (MQ=39) gatGGGGCCTTAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTAc < 1:114858/147‑1 (MQ=255) ccTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTa > 1:113905/1‑148 (MQ=255) cTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTAc < 2:113905/148‑1 (MQ=255) ggggCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GAAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAg > 6:92133/1‑148 (MQ=255) ccTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATa < 6:243145/149‑1 (MQ=255) cTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAg < 4:265716/149‑1 (MQ=255) cATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacag < 3:324649/99‑1 (MQ=33) cATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATcaacag > 4:324649/1‑99 (MQ=33) aTGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGca > 5:52507/1‑146 (MQ=255) cccGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGAc < 3:20797/148‑1 (MQ=255) ccGTCACCTGCCTCC‑GCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtctttt > 7:31796‑M2/1‑23 (MQ=255) ccGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTggg > 2:252154/1‑135 (MQ=255) ccGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTggg < 1:252154/135‑1 (MQ=255) aCCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAAccc < 4:193151/149‑1 (MQ=255) aCCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAAcc < 4:131306/148‑1 (MQ=255) ccTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGcac < 5:232499/137‑1 (MQ=255) ccTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGcac > 6:232499/1‑137 (MQ=255) tCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCTCGAAGAACAAGATCAAGAACAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGCAGGCACAGACAAAACCCTACAATc > 3:118306/1‑149 (MQ=255) c‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATcc < 6:33141/148‑1 (MQ=255) tcaAGGACggagtgaggggaccccggagctcatcgcaggggccggatgatgtgagcgaagcgttttttggttactttttgtcgcttttgacaaaaagtgactcgccttaagggccatccctttcaaggtcttttggttttggcggctt > 5:366824‑M2/2‑8 (MQ=255) gCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggcttt < 7:241062‑M2/149‑142 (MQ=255) gCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAAt < 6:88706/95‑1 (MQ=255) gCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAAt > 5:88706/1‑95 (MQ=255) gCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGa < 6:52507/149‑1 (MQ=255) cAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttg > 2:213872‑M2/1‑7 (MQ=255) aaGGCCggagttatgggaccccgtatcgcatcgcaggggccggatgatgtgagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttga > 5:93441‑M2/1‑6 (MQ=255) aaGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttga > 5:259896‑M2/1‑6 (MQ=255) aaGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttt < 2:277455‑M2/131‑126 (MQ=255) aaGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttt > 1:277455‑M2/1‑6 (MQ=255) aaGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAAcc > 7:287475/1‑136 (MQ=255) aaGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAAcc < 8:287475/136‑1 (MQ=255) aGGCCggagtgaggggaccccggagcgcagcgcaggggtcggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgat > 3:164759‑M2/1‑5 (MQ=255) aGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGt > 1:260980/1‑148 (MQ=255) gCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGTCAAAACCCTACAATCCGAGTaaa < 5:92133/149‑1 (MQ=255) ccTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTa < 6:222653/146‑1 (MQ=255) ccTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTa > 5:222653/1‑146 (MQ=255) cgtagtgagggtcccccggagcgcagcgcatgggccggatgatggtagcgcagcgttttttgtttactttttgtcgcgtttgacaaaaagtgactcgccgtaacggccatccctttcaaggtcttttggttttggcggctttgatgacc > 8:77606‑M2/1‑1 (MQ=255) cggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaagggccatccctttcaaggtcttttggttttggcggctttgatgacc > 8:321284‑M2/1‑1 (MQ=255) cggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaag < 4:157731‑M2/104‑104 (MQ=255) cggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcgcgtttgacaaaaagtgactcgccgtaag > 3:157731‑M2/1‑1 (MQ=255) | GCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCC‑GCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACAGCAACAGCAACAGCAATAGCTACAGCAATAGGCAACGCTGGGGGAGGCACAGACAAAACCCTACAATCCGAGTAAAGT > NC_002947/2258007‑2258300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |