New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2957086	52 (0.920)	3 (0.060)	3/228	NT	6.2%	intergenic (+41/‑155)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	= 2957143	45 (0.900)					intergenic (+98/‑98)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein

ACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTGGCAACAACGCGCCTCGGACCTCTA  >  NC_002947/2956998‑2957284                                                                                                                                                    |                                                                                                                                              aCCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCTGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCAtgc                                                                                                                                            >  7:124825‑M2/1‑146 (MQ=255)            cGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCCCCGTGTCGCCT‑‑GATTCGCGGGCAtgcccgcaccca                                                                                                                                   <  1:312841‑M2/147‑13 (MQ=255)                   cGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAg                                                                                                                          <  5:159391/149‑1 (MQ=255)                                tGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGGGCTTg                                                                                                             >  1:212939/1‑149 (MQ=255)                                  gTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGc                                                                                                            <  8:203951/148‑1 (MQ=255)                                  gTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGc                                                                                                            <  7:246147/148‑1 (MQ=255)                                     ggCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGa                                                                                                         <  3:157748/148‑1 (MQ=255)                                              tAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGt                                                                                                <  2:212939/148‑1 (MQ=255)                                              tAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTa                                                                                               <  5:118320/149‑1 (MQ=255)                                                aGCCGCTGACAAGGGCAACGGGCTTCCCTGTGGGAGCGGGATCGCCCGGGAACAGCGGCGAAGCCGGTGCCATCTTCCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTAc                                                                                              <  5:10039/148‑1 (MQ=38)                                                aGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTAcc                                                                                             <  1:91772/149‑1 (MQ=255)                                                aGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTAcc                                                                                             <  2:8057/149‑1 (MQ=255)                                                 gCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTAc                                                                                              <  1:300994/147‑1 (MQ=255)                                                 gCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTAc                                                                                              >  2:300994/1‑147 (MQ=255)                                                        aCAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACtt                                                                                     >  2:70104/1‑149 (MQ=255)                                                          aaGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTgc                                                                                   >  1:90980/1‑149 (MQ=255)                                                           aGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTgcg                                                                                  >  2:34256/1‑149 (MQ=255)                                                                aaCGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCaag                                                                              >  1:61921/1‑148 (MQ=255)                                                                aaCGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCaag                                                                              >  6:346910/1‑148 (MQ=255)                                                                 aCGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCaagaa                                                                            <  4:50940/149‑1 (MQ=255)                                                                       ttCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCg                                                                      >  4:235124/1‑149 (MQ=255)                                                                           cTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGAGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGc                                                                     >  1:102913/1‑148 (MQ=255)                                                                                ggAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACgg                                                             <  7:285253/149‑1 (MQ=255)                                                                                 gAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGt                                                            >  7:254945/1‑149 (MQ=255)                                                                                 gAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGt                                                            >  1:122062/1‑149 (MQ=255)                                                                                  aGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACtgtg                                                                                                    <  7:44229/108‑1 (MQ=255)                                                                                  aGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACtgtg                                                                                                    >  8:44229/1‑108 (MQ=255)                                                                                       gCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGAcc                                                                       >  5:242284/1‑132 (MQ=255)                                                                                       gCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGAcc                                                                       <  6:242284/132‑1 (MQ=255)                                                                                       gCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTg                                                      >  4:250116/1‑149 (MQ=255)                                                                                       gCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTg                                                      <  1:34256/149‑1 (MQ=255)                                                                                       gCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTg                                                      <  1:70104/149‑1 (MQ=255)                                                                                         aCGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCAtgcccgctcccacagggaagcgcgttgcccttgtcagcggc                                                                                                      <  8:276410‑M2/99‑42 (MQ=255)                                                                                         aCGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCAtgcccgctcccacagggaagcgcgttgcccttgtcagcggc                                                                                                      >  7:276410‑M2/1‑58 (MQ=255)                                                                                         aCGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGa                                                    <  5:346910/149‑1 (MQ=255)                                                                                         aCGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGa                                                    <  2:122062/149‑1 (MQ=255)                                                                                               gcgAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTc                                                           >  8:115434/1‑136 (MQ=255)                                                                                               gcgAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTc                                                           <  7:115434/136‑1 (MQ=255)                                                                                                         gCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCAtgcccgctcccacagggaagcgcgttgcccttgtcagcggcttacagcttgccgaccagccgcgccgtgcggtctacggctatccgggtcttctccaccagctcatc                                    <  2:299562‑M2/149‑108 (MQ=255)                                                                                                         gCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACActc                                    <  5:196416/149‑1 (MQ=255)                                                                                                           gAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACtctc                                  <  3:250116/149‑1 (MQ=255)                                                                                                                  gTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAAttat                           >  7:170374/1‑147 (MQ=255)                                                                                                                  gTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCt                           <  1:3213/149‑1 (MQ=255)                                                                                                                   tGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTg                          <  8:170374/149‑1 (MQ=255)                                                                                                                     ccATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTgg                         <  2:61921/148‑1 (MQ=255)                                                                                                                       aTCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTGGcaa                      >  2:1385/1‑149 (MQ=255)                                                                                                                                   gCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTGGCAACAACGCGCCTCg          >  5:32246/1‑149 (MQ=255)                                                                                                                                   gCCT‑‑GATTCGCGGGCATGCCCGCTCACACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTGGCAACAACGCGCCTCg          >  6:362098/1‑149 (MQ=255)                                                                                                                                    ccT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTGGCAACAACGCGCCTCg          >  4:298062/1‑148 (MQ=255)                                                                                                                                              gcgGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTGGCAACAACGCGCCTCGGACCTCTa  <  1:360896/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              ACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCT‑‑GATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGTCGTTTGGAGTACAAATGTACACTCTCGAATTCTGGCAACAACGCGCCTCGGACCTCTA  >  NC_002947/2956998‑2957284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.