New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3522702 =	50 (0.880)	4 (0.080)	4/228	NT	9.4%	intergenic (+489/‑208)	PP_5584/PP_3113	hypothetical protein/transposase
	?	NC_002947	3522789 =	33 (0.660)					intergenic (+576/‑121)	PP_5584/PP_3113	hypothetical protein/transposase

GCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAG  >  NC_002947/3522641‑3522931                                                                                                                                                     |                                                                                                                                               gCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGTGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCa                                                                                                                                                >  5:95145/1‑149 (MQ=255)      gggTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCa                                                                                                                                                <  3:182698/144‑1 (MQ=255)      gggTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCGCGGGGTTCAGCCGCGGTGCGGTGGTCACCACGCCCATGCCGATGCCCTGGGCCGGGGCAtagat                                                                                                                                           >  4:182698/1‑145 (MQ=255)         tCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCcag                                                                                                                                        <  6:95145/149‑1 (MQ=255)                    ccGTGCCAGCTCTTCCGCCACCAGCACATGTTCAAAGTCCTGGCCCAGGCCCATGGAGTTAAGCATCTACTAGGCGTTCACCCGCGGTGCGTTGGACACCAAGCAAATGCCGATTACAAAGACCATGGCATGCTCCAGCAGGCGCAACa                                                                                                                             >  4:332478/1‑149 (MQ=255)                    ccGTGCCAGCGCTTCGGCCACCAGCACATCTTCAAACTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCGCGGCGTTCAGGCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACa                                                                                                                             <  2:210163/149‑1 (MQ=255)                           aGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTgg                                                                                                                      <  5:96615/149‑1 (MQ=255)                                  cGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCAtt                                                                                                                  <  3:332478/146‑1 (MQ=255)                                    gCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTc                                                                                                             >  7:112275/1‑149 (MQ=255)                                     ccaccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTgg                                                                                                                      <  6:9750/139‑1 (MQ=255)                                     ccaccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTgg                                                                                                                      >  5:9750/1‑139 (MQ=255)                                      caccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCg                                                                                                            >  5:4459/1‑148 (MQ=255)                                        ccaGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCAAGGGCCTGGGCATGCTCCAGCAGGCGCAACCGGCCGGGCATTGGCTCGt                                                                                                           >  8:214033/1‑147 (MQ=255)                                                 gTTCACAGGGCTGGCCCCGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGCGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCAt                                                                                                <  4:285099/149‑1 (MQ=255)                                                  ttCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCAt                                                                                                <  6:4459/148‑1 (MQ=255)                                                       aGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAAccc                                                                                          <  8:112275/149‑1 (MQ=255)                                                              GCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACAtt                                                                                    <  6:109839‑M1/148‑1 (MQ=255)                                                                CCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCa                                                                                  <  6:41308‑M1/148‑1 (MQ=255)                                                                    GCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAgcg                                                                             <  2:165085‑M1/149‑1 (MQ=255)                                                                    GCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAgcg                                                                             >  1:315902‑M1/1‑149 (MQ=255)                                                                      ccatggcatcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCa                                                                                  >  1:51587‑M2/80‑142 (MQ=255)                                                                      ccatggcatcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCa                                                                                  <  2:51587‑M2/63‑1 (MQ=255)                                                                         TGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAc                                                                        >  6:137638‑M1/1‑149 (MQ=255)                                                                           GCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCt                                                                      >  7:214033‑M1/1‑149 (MQ=255)                                                                             gTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAgc                                                                              >  1:145800/1‑139 (MQ=255)                                                                             gTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAgc                                                                              <  2:145800/139‑1 (MQ=255)                                                                              tcggcatgtgcgtggtgaccaacgcaccgcggctgaacgccgagcacatgctgaacgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGAt                                                                   >  2:350198‑M2/72‑149 (MQ=255)                                                                                 aGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAc                                                                        <  7:67946/141‑1 (MQ=255)                                                                                 aGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTAc                                                                        >  8:67946/1‑141 (MQ=255)                                                                                     tgtgCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTa                                                                         <  2:71968/136‑1 (MQ=255)                                                                                     tgtgCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTa                                                                         >  1:71968/1‑136 (MQ=255)                                                                                        gCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCt                                                         >  5:122783/1‑149 (MQ=255)                                                                                              cGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTc                                                   <  5:109839/149‑1 (MQ=255)                                                                                                   aGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGa                                               <  5:41308/148‑1 (MQ=255)                                                                                                     ccGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAttt                                            >  5:220189/1‑149 (MQ=255)                                                                                                            ggctgaacgccgagcacatgctgaacgccatgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTg                                     <  1:350198‑M2/108‑1 (MQ=255)                                                                                                            gCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTg                                     >  3:31877/1‑149 (MQ=255)                                                                                                              gTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGa                                   <  5:237131/149‑1 (MQ=255)                                                                                                                     accacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAt                                              <  4:38761/131‑1 (MQ=255)                                                                                                                     accacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGAt                                              >  3:38761/1‑131 (MQ=255)                                                                                                                     accacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATttctttct                                      >  8:118470/1‑139 (MQ=255)                                                                                                                     accacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATttctttct                                      <  7:118470/139‑1 (MQ=255)                                                                                                                      ccacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATACCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCg                           >  8:124801/1‑149 (MQ=255)                                                                                                                       cacGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGa                          >  4:280127/1‑149 (MQ=255)                                                                                                                          gCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCa                       >  3:315492/1‑149 (MQ=255)                                                                                                                              aTGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCatgat                   <  4:315492/149‑1 (MQ=255)                                                                                                                                        catgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGa                                   <  5:203239‑M2/110‑1 (MQ=255)                                                                                                                                        catgggcctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGa                                   >  6:203239‑M2/14‑123 (MQ=255)                                                                                                                                               ctgggcATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAg  >  1:215959‑M2/7‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               GCAGCGGGTCCGGTTTGGGCCGTGCCAGCTCTTCGGCCACCAGCACATGTTCAAAGTGCTGGCCCAGGCCCATGGCGTTCAGCATGTGCTCGGCGTTCAGCCGCGGTGCGTTGGTCACCACGCACATGCCGATGCCATGGGCCTGGGCATGCTCCAGCAGGCGCAACAGGCCTGGCATTGGCTCGTAAGCGCTCCATGAACCCCACATTCAAAGCGCTTACCTGATCCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCTCGCCGACCATGATGCGACCCGACGCCAAAG  >  NC_002947/3522641‑3522931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.