New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3588116 | 43 (0.760) | 4 (0.080) | 4/218 | NT | 8.7% | intergenic (+37/‑38) | catA‑II/benE‑II | catechol 1,2‑dioxygenase/benzoate transport protein |
? | NC_002947 | = 3588144 | 48 (1.000) | intergenic (+65/‑10) | catA‑II/benE‑II | catechol 1,2‑dioxygenase/benzoate transport protein |
TTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATC > NC_002947/3587999‑3588291 | ttCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGttggtg > 4:140980/1‑147 (MQ=255) aCTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTggagcgg > 3:257022‑M2/1‑142 (MQ=255) ccAGTTGCAGCAGGCCCAGGGCGGTGCCGATGCGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTggagcgggc > 8:65793‑M2/1‑138 (MQ=255) ccAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGGCAG‑CCCCCGCCCCCACGTGACGCCCTGGGAGTCGTTTGTTGCGCGGGc > 6:45359/1‑147 (MQ=255) ccAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTGGGTggagcgggcag < 8:278834‑M2/149‑12 (MQ=255) gcagGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTTATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGGCGTTGTTggagcgggcatgcccgcgaa > 7:190974‑M2/1‑129 (MQ=255) ggTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACAcc > 7:274546/1‑148 (MQ=255) ccGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCaaa > 3:156494/1‑148 (MQ=255) gcagcgcagcGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCGAACACCCCAACAAGAGcc > 8:239767/1‑149 (MQ=255) agcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCg < 7:192525/149‑1 (MQ=255) gcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGc < 7:76612/149‑1 (MQ=255) gcgcagcgGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGc > 3:194263/1‑149 (MQ=255) cgggcggCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACaaa < 4:194263/149‑1 (MQ=255) gggcggCCGCGAGGTTGGCCGGAGGCCTGACCCCCCGCGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTCACGCCGGTGCAGGCGTTGTCGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAg < 8:274546/149‑1 (MQ=255) gAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCt < 4:156494/149‑1 (MQ=255) tttGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACCCCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCt > 1:281917/1‑149 (MQ=255) cAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGc < 1:51773/148‑1 (MQ=255) aggaggCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCga < 5:155329/149‑1 (MQ=255) ggaggCCTGATCCACAGAGTGGGCTGTTTCGCGGGCATG‑CCCCCACCCACAAGAGAAGCATGTGCACTCGTTGTTGGAGCGGGCAAGCCCGCGAAGCCGCCAACACCCAAAAAAAGCCCCGCCCAAAAGGCCGGCCGCGGCCGTGc > 4:159181/1‑146 (MQ=255) gagcCCGGATCCACCGAGTGGGCGGTTCCGCGGCCAGC‑CCCGCTCCCACAGGTGACGCCGGTGCAGTCGGTGTTGGCGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCgaga < 5:238524/149‑1 (MQ=255) gtcctCCACCGCTTGGGGTGTTTCGCGGG‑ATGCCCCGCTCCAACCGGTGACGCCTGTGCAGTCTTTGTGGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCtt < 4:179693/145‑1 (MQ=255) cTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt > 5:207256/1‑148 (MQ=255) cTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCt > 5:202302/1‑148 (MQ=255) tGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCtt > 5:200823/1‑148 (MQ=255) gATCCACCGCGGGGGCTGTTCCGCGGGCATG‑CCCGCTCCCACCGGTGACGCCTGTGCAGGCGTTGTTGGCGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCa < 5:43815/149‑1 (MQ=255) gcaccttgTGGGGTGTTTCGGGGTGATG‑GCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTGGGCGCGGGCATGCCCGCGAAGCAGCCAACACGCAAAGAAGAGCCCGCCACATAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATg < 4:248225/141‑1 (MQ=255) aCCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGCGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATg > 3:248225/1‑146 (MQ=255) aCCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGaa > 8:93807/1‑148 (MQ=255) tGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATc > 2:216870/1‑147 (MQ=255) tGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATc > 3:327910/1‑147 (MQ=255) cgcgGGCATG‑CCCGCTACCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGGATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCCCCACAAAGGCCCGCCGCAGCCGTGCGAGAAGCGTCAAGAAAACGCTGATCAAGGACt > 4:2096/1‑149 (MQ=255) gcgGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTg > 8:312546/1‑149 (MQ=255) gCATG‑CCCGCTCCCACAGGGTACGCGTGTGCCGCGGTTGTTGGCGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct < 3:2096/149‑1 (MQ=255) aTG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcctgctgcaactg < 8:234304‑M2/148‑110 (MQ=255) tG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGCGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCtgtg > 7:264100/1‑149 (MQ=255) cccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcctgctgcaactggaag < 4:7072‑M2/149‑114 (MQ=255) cccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcctgctgcaactggaa > 7:234304‑M2/1‑36 (MQ=255) ccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCAt < 7:319014/118‑1 (MQ=255) ccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCAt > 8:319014/1‑118 (MQ=255) ccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCg < 7:93807/149‑1 (MQ=255) ccGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCg > 3:102041/1‑149 (MQ=255) ccACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGcc > 6:252292/1‑146 (MQ=255) ccACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGcc < 5:252292/146‑1 (MQ=255) acaGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct < 3:322413/135‑1 (MQ=255) acaGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct > 4:322413/1‑135 (MQ=255) gTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct > 2:35984/1‑131 (MQ=255) gTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct < 1:35984/131‑1 (MQ=255) aaGCCTGTGCAGTCGTTGTTggagcgggcatgcccgcgaaacagcccactcggtggatcaggcctcctgcaaagctcgcggccgcccgctgcgctgctcatcggcaccgccctgggcctgctgcaactggaagtcgaacttcagctcgg > 3:7072‑M2/1‑20 (MQ=255) aaGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCgg > 6:78239/1‑148 (MQ=255) aaGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCgg < 4:327910/148‑1 (MQ=255) gCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAAc < 7:40220/107‑1 (MQ=255) gCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAAc > 8:40220/1‑107 (MQ=255) gCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct < 3:129285/126‑1 (MQ=255) gCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGctct > 4:129285/1‑126 (MQ=255) gCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGgcag > 6:327131/1‑149 (MQ=255) tgCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCAACGTCGCCGGCAGCAtt < 7:239767/148‑1 (MQ=255) aGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCa < 6:200823/149‑1 (MQ=255) gttgttGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGCGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCCTTGCCacgac > 8:214189/1‑149 (MQ=255) ttgGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGAtc < 3:140980/149‑1 (MQ=255) | TTCGACTTCCAGTTGCAGCAGGCCCAGGGCGGTGCCGATGAGCAGCGCAGCGGGCGGCCGCGAGCTTTGCAGGAGGCCTGATCCACCGAGTGGGCTGTTTCGCGGGCATG‑CCCGCTCCCACAGGTGAAGCCTGTGCAGTCGTTGTTGGAGCGGGCATGCCCGCGAAGCAGCCAACACCCAAACAAGAGCCCGCCACAAAGGCCGGCCGCTGCCTTGCGAGAAGCTTCATGAAAACGCTGATCAAGGACTGCTCTGTGTCGGCCATCGTCGCCGGCAGCATTGCCACGACGATC > NC_002947/3587999‑3588291 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |