New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4637861	45 (0.800)	3 (0.050)	3/250	NT	6.3%	coding (577/1617 nt)	PP_4103	low‑affinity inorganic phosphate transporter
	?	NC_002947	= 4637911	45 (0.820)					coding (627/1617 nt)	PP_4103	low‑affinity inorganic phosphate transporter

CTTGGCACTTGGTGGCTGGGCCTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCACCGTGGTGGATCCGCAGCCTACTGATT  >  NC_002947/4637765‑4638055                                                                                                                                                   |                                                                                                                                                 cTTGGCACTTGGTGGCTGGGCCTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATgc                                                                                                                                                <  2:215578‑M2/149‑3 (MQ=255) cTTGGCACTTGGTGGCTGGGCCTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATgc                                                                                                                                                <  3:248710‑M2/149‑3 (MQ=255)       aCTTGGTGGCTGGGCCTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCctgct                                                                                                                                          <  5:218315/149‑1 (MQ=255)             tggCTGGGCCTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTtct                                                                                                                                     >  2:298068/1‑148 (MQ=255)               gCTGGGCCTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCAc                                                                                                                                  >  6:315063/1‑149 (MQ=255)                     ccTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGa                                                                                                                            <  1:298068/149‑1 (MQ=255)                     ccTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGa                                                                                                                            <  3:169648/149‑1 (MQ=255)                         ccGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTgg                                                                                                                        <  1:215578/149‑1 (MQ=255)                             cATCGTCCTCGCACACCCTCATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGGCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGtttt                                                                                                                    <  2:305950/149‑1 (MQ=255)                                    cTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTttgcttgc                                                                                                              <  7:236240/148‑1 (MQ=255)                                    cTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTgcg                                                                                                             >  2:39696/1‑149 (MQ=255)                                           acCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCt                                                                                                      <  3:8835/149‑1 (MQ=255)                                             ccTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTttgcttgc                                                                                                              >  8:221499/1‑139 (MQ=255)                                             ccTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTttgcttgc                                                                                                              <  7:221499/139‑1 (MQ=255)                                             ccTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGt                                                                                                    >  4:29688/1‑149 (MQ=255)                                                     gCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGctgctg                                                                                            >  8:82641/1‑149 (MQ=255)                                                         gATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGcc                                                                                         <  5:315063/148‑1 (MQ=255)                                                            catcGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTgc                                                                                     <  4:116452/149‑1 (MQ=255)                                                                    tgggcgtggCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTg                                                                             <  4:248710/149‑1 (MQ=255)                                                                     gggcgtggCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTgg                                                                            >  5:117414/1‑149 (MQ=255)                                                                       gcgtggCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTc                                                                          <  3:103534/149‑1 (MQ=255)                                                                           ggCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAAc                                                                      >  5:150389/1‑149 (MQ=255)                                                                            gCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTgcg                                                                                                             <  8:13985/109‑1 (MQ=255)                                                                            gCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTgcg                                                                                                             >  7:13985/1‑109 (MQ=255)                                                                               aaTGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGc                                                                    >  2:48400/1‑147 (MQ=255)                                                                               aaTGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGc                                                                    >  2:214481/1‑147 (MQ=255)                                                                                           cATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCa                                                      <  6:117414/149‑1 (MQ=255)                                                                                            aTGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATgcccatgcatcagcgcattggccacgcccacgccgatgatcgagccaatcagggtgtgcgaggacgatgccggcaggcccagccaccaagtgc                                                     <  6:157797‑M2/149‑94 (MQ=255)                                                                                             tGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCa                                                      <  2:76305/147‑1 (MQ=255)                                                                                             tGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCa                                                      >  1:76305/1‑147 (MQ=255)                                                                                               ggCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGc                                                   <  1:39696/148‑1 (MQ=255)                                                                                                  gTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATgcccatgcatcagcgcattggccacgcccacgccgatgatcgagccaatcagggtgtgcgaggacgatgccggcaggcccagccaccaagtgccaaggt                                               <  6:321028‑M2/149‑100 (MQ=255)                                                                                                        gCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGc                                         <  7:82641/149‑1 (MQ=255)                                                                                                        gCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGc                                         >  5:74601/1‑149 (MQ=255)                                                                                                         cACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATgcccatgcatcagcgcattggccacgcccacgccgatgatcgagccaatcagggtgtgcgaggacgatgccggcaggcccagccaccaagtgccaaggttccagat                                        >  5:321028‑M2/1‑43 (MQ=255)                                                                                                         cACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGc                                         >  3:34954/1‑148 (MQ=255)                                                                                                          aCCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCa                                       >  7:191470/1‑149 (MQ=255)                                                                                                          aCCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGATGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCa                                       <  4:258342/149‑1 (MQ=255)                                                                                                            cAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTACGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGa                                     >  6:66296/1‑149 (MQ=255)                                                                                                               cggcgTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGacac                                  <  1:48400/149‑1 (MQ=255)                                                                                                                  cgTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGc                               <  1:214481/149‑1 (MQ=255)                                                                                                                   gTGGACTGGG‑‑CAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCAc                            >  4:46965/1‑149 (MQ=255)                                                                                                                    tGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCa                             >  8:38634/1‑149 (MQ=255)                                                                                                                       aCTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCa                                       >  2:255756/1‑136 (MQ=255)                                                                                                                       aCTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCa                                       <  1:255756/136‑1 (MQ=255)                                                                                                                         tGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAg                                                                 <  7:338167/108‑1 (MQ=255)                                                                                                                         tGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAg                                                                 >  8:338167/1‑108 (MQ=255)                                                                                                                           ggCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCACCgtggt                      <  3:29688/149‑1 (MQ=255)                                                                                                                              ccAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCACCGTGGTGGa                   >  1:23655/1‑149 (MQ=255)                                                                                                                                  gCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCACCGTGGTGGATCCg               >  4:91770/1‑149 (MQ=255)                                                                                                                                    cAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCACCGTGGTGGATCCg               >  2:41725/1‑147 (MQ=255)                                                                                                                                               gTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCACCGTGGTGGATCCGCAGCCTACTGAtt  <  7:38634/149‑1 (MQ=255)                                                                                                                                                ttATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAgg                                                    <  6:68898/98‑1 (MQ=255)                                                                                                                                                ttATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAgg                                                    >  5:68898/1‑98 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CTTGGCACTTGGTGGCTGGGCCTGCCGGCATCGTCCTCGCACACCCTGATTGGCTCGATCATCGGCGTGGGCGTGGCCAATGCGCTGATGCATGGGCGTGACGGCACCAGCGGCGTGGACTGGGCCCAGGCCAGCAAGGTGGGTTATGCCCTGCTGTTCTCACCGCTGATTGGTTTTGCTTGCGCAGCCCTGTTGCTGCTGGCCCTGCGCGCGCTGGTCAAACGCAAGGCGCTGTACCAGGCACCGGAAGGCCAGACACCGCCACCGTGGTGGATCCGCAGCCTACTGATT  >  NC_002947/4637765‑4638055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.