New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4683186 | 28 (0.500) | 4 (0.090) | 4/214 | NT | 11.7% | intergenic (+45/‑176) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein |
? | NC_002947 | = 4683234 | 37 (0.790) | intergenic (+93/‑128) | mltD/PP_4146 | membrane‑bound lytic murein transglycosylase D/peptide ABC transporter substrate‑binding protein |
CGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCT > NC_002947/4683090‑4683375 | cGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGCAgcgg > 7:325441‑M2/1‑145 (MQ=255) ctcaacgcccgaggtagacggtcagggtctggcctggcttgagggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGGCCTCAAAGCCGGGGTCGTACCTGTGGGAGCggg > 7:268412‑M2/49‑149 (MQ=255) ccTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccg < 3:110268‑M2/149‑14 (MQ=255) gccaggccagACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatg < 7:101629‑M2/149‑20 (MQ=255) ccagACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTg < 8:101629/149‑1 (MQ=255) cagACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTg > 1:312774/1‑148 (MQ=255) ccTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAAcc > 4:321917/1‑149 (MQ=255) aCCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGGTTTTGACAGTCCTCAAAGCCGGGGTCGTACCTGTGGGAGCGGGCCTGCCCGCGAATGGGCCGGAAAACCCAGCCACTgg > 4:41233/1‑148 (MQ=39) gggcgtTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAAcc > 5:67293‑M2/7‑149 (MQ=255) gggCGATGACTCGTTACAGGGGCTGCTTTCCAGCCCAATCGCGGGCACGCCCGCCCCCACAGCTATTACACACACCTCAACGCCGGAGACGTACCAGTCCACCCGCCCGTCCCCCCCAATGGGCCTCAAAACACAGCCACTGGAAAAcc > 6:185437/1‑149 (MQ=255) tGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGcc > 2:1427/1‑149 (MQ=255) tCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCctc < 1:1427/149‑1 (MQ=255) gTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTCTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCctctc > 6:277771/1‑149 (MQ=255) ttACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCctctcg > 5:138106/1‑148 (MQ=255) cAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCtttt < 2:312774/149‑1 (MQ=255) cAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCttt < 4:110268/148‑1 (MQ=255) cAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTGTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGCGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCtttt < 5:72882/149‑1 (MQ=255) aGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCCCCCCCAGAGGTTTTTCAAAGTCCACAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCAAGCCCCTCTCttttt > 2:123702/1‑149 (MQ=255) tttGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCcca > 3:258772/1‑149 (MQ=255) gcgGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTg < 3:93198/149‑1 (MQ=255) gtgCACGCCCGCCCCCAGCGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTa < 3:265507/147‑1 (MQ=255) ggCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaacgcccgaggtagacggtcagggtctggcctggcttgagggc < 2:35967‑M2/149‑91 (MQ=255) gCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggctgcaaagcagcccctctaacgactcaacgc < 3:17951‑M2/110‑53 (MQ=255) gcccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGAt > 7:233356/1‑149 (MQ=255) gcccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGAt > 7:241836/1‑149 (MQ=255) gcccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGAt < 8:241836/149‑1 (MQ=255) ccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaacgcccgaggtagacgggcagggtctggcctggcttgagggcgtggccg < 6:91705‑M2/149‑98 (MQ=255) ccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAACCTGAAACTGTACt > 8:233626/1‑143 (MQ=255) ccgcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCACTCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACt < 7:233626/143‑1 (MQ=255) gcccCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAAT‑GGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAg > 3:1440/1‑149 (MQ=255) ccAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCATGAAAACCAAGCAACTGGAAAACCATAGCCCCTCTGTTTTTCCAACCCAACCAAGCTGTTAATGTACTGGATCAAAGcc > 2:322014/1‑148 (MQ=255) agagGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCaa > 4:312615/1‑149 (MQ=255) agagGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCaa > 3:47964/1‑149 (MQ=255) ggTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGc < 8:233356/149‑1 (MQ=255) ggTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGc < 4:258772/149‑1 (MQ=255) tttCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCctc < 5:185437/148‑1 (MQ=255) ttCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCctct < 3:321917/148‑1 (MQ=255) cacaGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGa > 3:310934/1‑149 (MQ=255) acaGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGAt > 7:330090/1‑149 (MQ=255) acaGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGAt < 3:312615/149‑1 (MQ=255) aGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCg < 5:277771/149‑1 (MQ=255) tCCTCAAAGCCGGTGTCGTACCTGTGGGAgcgggcgtgcccgcgaatgggctgcaaagcagcccctgtaacgactcaacgcccgaggtagacggtcagggtctggcctggcttgagggcgtggccgctgcgtgggttccagcgcttgag > 1:35967‑M2/1‑29 (MQ=255) tCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAAT‑GGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGAt < 4:1440/149‑1 (MQ=255) aaaGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCccacc > 6:99380/1‑99 (MQ=255) aaaGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCccacc < 5:99380/99‑1 (MQ=255) tCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATAc < 1:322014/148‑1 (MQ=255) gTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTc > 7:79295/1‑149 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTACcct > 8:245753/1‑149 (MQ=255) gAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTccc < 4:47555/141‑1 (MQ=255) gAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTccc > 3:47555/1‑141 (MQ=255) | CGGCCACGCCCTCAAGCCAGGCCAGACCCTGACCGTCTACCTCGGGCGTTGAGTCGTTACAGGGGCTGCTTTGCAGCCCATTCGCGGGCACGCCCGCCCCCAGAGGTTTTTCACAGTCCTCAAAGCCGGTGTCGTACCTGTGGGAGCGGGCGTGCCCGCGAATGGGCCTGAAAACCCAGCCACTGGAAAACCCTAGCCCCTCTCTTTTTCCAACCCCACCAAGCTGTTACTGTACTCGATCAAAGCCCAACGCCTCTGGATCGGATGCCGATTTGATACGTCCCCT > NC_002947/4683090‑4683375 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |