New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4711918	51 (0.900)	3 (0.060)	3/244	NT	5.3%	coding (150/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	= 4711939	58 (1.080)					coding (171/2115 nt)	PP_4171	hypothetical protein

TGTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGAC  >  NC_002947/4711803‑4712071                                                                                                                                         |                                                                                                                                     tgTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCCCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACt                                                                                                                           >  5:312623/1‑148 (MQ=255)  gTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACTTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGa                                                                                                                         >  4:32794/1‑149 (MQ=255)     aTTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTc                                                                                                                      >  1:215376/1‑149 (MQ=255)       tGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTcgc                                                                                                                    >  6:324950/1‑149 (MQ=255)         aCCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCgcgc                                                                                                                  >  2:195778/1‑149 (MQ=255)             cccTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGc                                                                                                              >  2:170390/1‑149 (MQ=255)              ccTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCg                                                                                                             <  6:158214/149‑1 (MQ=255)                       cggTCAGGCCGTGGCCGACGACTTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTg                                                                                                    <  3:32794/149‑1 (MQ=255)                          tCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACa                                                                                                 >  5:238649/1‑149 (MQ=255)                              gCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATccc                                                                                             >  2:324747/1‑149 (MQ=255)                                cGTGGCCGACGACCTGTTCATCGACAACCCCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGa                                                                                                   >  7:108477/1‑141 (MQ=255)                                cGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGa                                                                                                   <  8:108477/141‑1 (MQ=255)                                cGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGAAATcccc                                                                                            >  7:253915/1‑148 (MQ=255)                                     ccGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAActg                                                                                      <  7:214613/149‑1 (MQ=255)                                      cgacgaCCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTc                                                                                                                      >  5:99824/1‑116 (MQ=255)                                      cgacgaCCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTc                                                                                                                      <  6:99824/116‑1 (MQ=255)                                      cgacgaCCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCg                                                                                           <  6:317710/143‑1 (MQ=255)                                      cgacgaCCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGaagctc                                                                                     >  5:317710/1‑145 (MQ=255)                                         cgacCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACtgctgc                                                                                  <  1:324747/149‑1 (MQ=255)                                         cgacCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACtgctgc                                                                                  <  1:195778/149‑1 (MQ=255)                                             cTGTTCATCGACAACACCGACGTGCCACAGGTTCTGACCGCCACACGCCTGAATCAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTTCTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCt                                                                              <  7:194324/149‑1 (MQ=255)                                              tGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTg                                                                             >  1:126370/1‑149 (MQ=255)                                                ttCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTg                                                                             <  1:343150/147‑1 (MQ=255)                                                   aTCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCACGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTAcc                                                                        >  2:235595/1‑149 (MQ=255)                                                      gACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCACGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCgg                                                                      <  1:235595/148‑1 (MQ=255)                                                         aacaCCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCa                                                                                                                <  7:16567/103‑1 (MQ=255)                                                         aacaCCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCa                                                                                                                >  8:16567/1‑103 (MQ=255)                                                         aacaCCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCat                                                                  >  2:353129/1‑149 (MQ=255)                                                           cacCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCatga                                                                <  2:359597/149‑1 (MQ=255)                                                           cacCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCatga                                                                >  6:293197/1‑149 (MQ=255)                                                                  cTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGt                                                                                                     >  8:33115/1‑105 (MQ=255)                                                                  cTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGt                                                                                                     <  7:33115/105‑1 (MQ=255)                                                                     ccACAGGTTCTGCCAGCGACGCGGCTGGAGCAATCCCCCGCCGCTGTCCCGGGCCCCATGACGGGTCTCGACAGCGCACTGCTTCGCGGCCGCGGGGGCCGTGGCATCCCCGCGCTGCGGCGCCGGGTACCGGGCTTGCTGATCGGCTa                                                      >  4:214163/1‑149 (MQ=255)                                                                       acaGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAActgct                                                                                    <  8:111392/117‑1 (MQ=255)                                                                       acaGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAActgct                                                                                    >  7:111392/1‑117 (MQ=255)                                                                           gTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGc                                                >  1:317848/1‑149 (MQ=255)                                                                           gTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGAGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTAAGGTGc                                                >  7:294892/1‑149 (MQ=255)                                                                           gTTCTGACCGCCACACGCATGAAACAATCCCCCGCCGCAGTCCCTGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGc                                                <  8:294892/149‑1 (MQ=255)                                                                            ttCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGcc                                               <  2:215376/149‑1 (MQ=255)                                                                               tGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCgg                                             >  8:1216/1‑148 (MQ=255)                                                                                gACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGAACACGAACTGATTACCCCCAGCGGTTCCCGTGACCTACCCGAACTGCTGCGCCTGGTACCGGGCATGATGATACGCAACGGTTCCGGt                                            >  1:103509/1‑148 (MQ=255)                                                                                     ccACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCaa                                      <  2:126370/149‑1 (MQ=255)                                                                                           gCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACg                                <  8:253915/149‑1 (MQ=255)                                                                                                  aCAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACg                                                    <  1:212661/122‑1 (MQ=255)                                                                                                  aCAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACg                                                    >  2:212661/1‑122 (MQ=255)                                                                                                      tCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCa                     >  1:30298/1‑149 (MQ=255)                                                                                                          ccgccgCTGTCCCGGGCAGCATGACCGTACTCgacagcggcgggggattgtttcaggcgtgtggcggtcagaacctgtggcaggtcggtgttgtcgatgaacaggtcgtcggccacggcctgaccgccgagcagggcg                            <  4:301466‑M2/138‑107 (MQ=255)                                                                                                          ccgccgCTGTCCCGGGCAGCATGACCGTACTCgacagcggcgggggattgtttcaggcgtgtggcggtcagaacctgtggcaggtcggtgttgtcgatgaacaggtcgtcggccacggcctgaccgccgagcagggcg                            >  3:301466‑M2/1‑32 (MQ=255)                                                                                                          ccgccgCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTaa                                          >  7:40600/1‑124 (MQ=255)                                                                                                          ccgccgCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTaa                                          <  8:40600/124‑1 (MQ=255)                                                                                                          ccgccgCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGgc                 <  2:103509/149‑1 (MQ=255)                                                                                                            gccgcTGTCCCGGGCAGCATGACCGTACTCgacagcggcgggggattgttacaggcgtgtggcggtcagaacctgtggcaggtcggtgttgtcgatgaacaggtcgtcggccacggcctgaccgccgagcagggcggtcaataacag                 <  1:88775‑M2/147‑118 (MQ=255)                                                                                                            gccgcTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGgcag               >  8:256964/1‑149 (MQ=255)                                                                                                                   tCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGt         <  6:312623/148‑1 (MQ=255)                                                                                                                   tCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGt         <  5:293197/148‑1 (MQ=255)                                                                                                                   tCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGt         >  2:60413/1‑148 (MQ=255)                                                                                                                       gggCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAac     >  6:272241/1‑148 (MQ=255)                                                                                                                        ggCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAacga   <  1:60413/149‑1 (MQ=255)                                                                                                                         gcagcaTGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAacgac  <  2:30298/149‑1 (MQ=255)                                                                                                                         gcagcaTGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAacgac  <  1:170390/149‑1 (MQ=255)                                                                                                                              aTGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACg                                                    <  6:78168/94‑1 (MQ=255)                                                                                                                              aTGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACg                                                    >  5:78168/1‑94 (MQ=255)                                                                                                                                         |                                                                                                                                     TGTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCTGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTCAACGAC  >  NC_002947/4711803‑4712071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.