New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4834125 =	35 (0.620)	4 (0.070)	4/254	NT	10.2%	intergenic (‑71/‑101)	PP_4246/PP_4247	substrate‑binding protein/exonuclease
	?	NC_002947	4834158 =	36 (0.650)					intergenic (‑104/‑68)	PP_4246/PP_4247	substrate‑binding protein/exonuclease

CAGGGTGGACAAGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGTTACAGAGATGGAAGTCATT  >  NC_002947/4834016‑4834303                                                                                                                                                 |                                                                                                                                                  cAGGGTGGACAAGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGc                                                                                                                                              >  1:356594/1‑148 (MQ=255)      tGGACAAGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAgg                                                                                                                                        <  5:77706/149‑1 (MQ=255)      tGGACAAGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAg                                                                                                                                         >  3:170807/1‑148 (MQ=255)         aCAAGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATg                                                                                                                                     >  7:37257/1‑149 (MQ=255)           aaGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCaa                                                                                                                                                   <  8:268447/133‑1 (MQ=255)           aaGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCaa                                                                                                                                                   >  7:268447/1‑133 (MQ=255)                    aGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGccc                                                                                                                           <  4:170807/148‑1 (MQ=255)                     ggCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCg                                                                                                                          <  8:158499/148‑1 (MQ=255)                        tcaccaaccaatggcccataccaggctcccctgcagatcctgctagagcgtagccaatgtccgggcatacggcatcctatggcatttTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAAt                                                                                                                                                >  1:87898‑M1/88‑124 (MQ=255)                        tcaccaaccaatggcccataccaggctcccctgcagatcctgctagagcgtagccaatgtccgggcatacggcatcctatggcatttTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAAt                                                                                                                                                <  2:87898‑M1/37‑1 (MQ=255)                            ccaaccaatggcccataccaggctcccctgcagatcctgctagagcgtagccaatgtccgggcatacggcatcctatggcattttgacgcctgctctttgtgccaaagcaggcggcaAAATGCCATAGGATGCCGt                                                                                                                                 >  3:104153‑M2/118‑136 (MQ=255)                            ccaaccaatggcccataccaggctcccctgcagatcctgctagagcgtagccaatgtccgggcatacggcatcctatggcattttgacgcctgctctttgtgccaaagcaggcggcaAAATGCCATAGGATGCCGt                                                                                                                                 <  4:104153‑M2/19‑1 (MQ=255)                                       aGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAg                                                                                                       <  2:356594/149‑1 (MQ=255)                                       aGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAg                                                                                                       >  5:57377/1‑149 (MQ=255)                                         aCGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCa                                                                                                     <  8:37257/149‑1 (MQ=255)                                                 tcatcaCGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACATCAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTg                                                                                              >  1:274711/1‑149 (MQ=255)                                                    tcaCGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAgg                                                                                          >  6:45239/1‑149 (MQ=255)                                                    tcaCGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGAAgg                                                                                          >  4:225503/1‑149 (MQ=255)                                                                    tATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATggg                                                                           >  3:88650/1‑148 (MQ=255)                                                                    tATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATggg                                                                           <  4:88650/148‑1 (MQ=255)                                                                         gcTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCAttg                                                                     <  3:259817/149‑1 (MQ=255)                                                                          cTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCAttgg                                                                    >  3:281505/1‑149 (MQ=255)                                                                                cTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTg                                                              <  7:101489/149‑1 (MQ=255)                                                                                    gCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGa                                                             >  6:126549/1‑146 (MQ=255)                                                                                    gCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGa                                                             <  5:126549/146‑1 (MQ=255)                                                                                         ttCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCt                                                      <  5:45239/148‑1 (MQ=255)                                                                                            acggcatcctatggcatttTGCCGCCTGCT‑TTGGCACAAAGAGCAGGCGTCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCAttggttgg                                                                >  3:104153‑M1/20‑136 (MQ=255)                                                                                            acggcatcctatggcatttTGCCGCCTGCT‑TTGGCACAAAGAGCAGGCGTCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCAttggttgg                                                                <  4:104153‑M1/117‑1 (MQ=255)                                                                                              ggggCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTgg                                                    <  5:165950/145‑1 (MQ=255)                                                                                              ggggCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTgg                                                    >  6:165950/1‑145 (MQ=255)                                                                                                ggCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTTGTGATCGACCTGGAAGcca                                              <  3:225503/149‑1 (MQ=255)                                                                                                           ctactGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACcgacga                                    >  8:20253/1‑149 (MQ=255)                                                                                                            tactGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGAt                                   <  6:57377/149‑1 (MQ=255)                                                                                                            tactGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGAt                                   >  5:169283/1‑149 (MQ=255)                                                                                                            attttgccgcctgctttggcacaaagagcaggcgtcaAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGa                                                             <  2:87898‑M2/87‑1 (MQ=255)                                                                                                            attttgccgcctgctttggcacaaagagcaggcgtcaAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGa                                                             >  1:87898‑M2/38‑124 (MQ=255)                                                                                                                GACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGAtggtg                               <  8:8968‑M1/149‑1 (MQ=255)                                                                                                                     cTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCAttggttg                                                                 <  3:136684/110‑1 (MQ=255)                                                                                                                     cTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCAttggttg                                                                 >  4:136684/1‑110 (MQ=255)                                                                                                                      tGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGc                         >  3:217671/1‑149 (MQ=255)                                                                                                                         tctTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCgg                      >  4:255440/1‑149 (MQ=255)                                                                                                                           tttGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGt                     >  3:353712/1‑148 (MQ=255)                                                                                                                           tttGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGACACCACCGACGATGGTGGGTGGCCGGt                     >  4:343451/1‑148 (MQ=255)                                                                                                                               tgCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGTTACa                 <  3:255440/148‑1 (MQ=255)                                                                                                                                      aGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGTTACAGAGATgg          <  3:343451/149‑1 (MQ=255)                                                                                                                                        cAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGTTACAGAGATGGaa        <  4:281505/149‑1 (MQ=255)                                                                                                                                         aGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGTTACAGAGATGGAAg       >  5:50964/1‑149 (MQ=255)                                                                                                                                              gcAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGTTACAGAGATGGAAGTCAtt  >  1:118265/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                  CAGGGTGGACAAGGCCTTGAGGCCGGGCGCTGGAGTCAAGACGGACACTCATCACGGTTTATGCCTGTATGCGCTTAAGCTAGGCGTTTTCCAGGGGCGACA‑CAACTACTGACGCCTGCTCTTTGTGCCAA‑AGCAGGCGGCAAAATGCCATAGGATGCCGTATGCCCGGACATTGGCTACGCTCTAGCAGGATCTGCAGGGGAGCCTGGTATGGGCCATTGGTTGGTGATCGACCTGGAAGCCACCACCGACGATGGTGGGTGGCCGGTTACAGAGATGGAAGTCATT  >  NC_002947/4834016‑4834303

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.