New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5196383 =	57 (1.010)	4 (0.080)	3/238	NT	8.2%	coding (132/690 nt)	ybgJ	allophanate hydrolase subunit 1
	?	NC_002947	5196428 =	37 (0.710)					coding (87/690 nt)	ybgJ	allophanate hydrolase subunit 1

GCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGT  >  NC_002947/5196280‑5196572                                                                                                                                                        |                                                                                                                                                 gCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATc                                                                                                                                                  >  7:157851/1‑149 (MQ=255) gCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATc                                                                                                                                                  >  2:13939/1‑149 (MQ=255)    gCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCAt                                                                                                                                               >  7:273650/1‑149 (MQ=255)       aGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATgg                                                                                                                                             >  1:110511/1‑148 (MQ=255)       aGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATgg                                                                                                                                             >  3:32467/1‑148 (MQ=255)       aGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGc                                                                                                                                            <  5:223230/149‑1 (MQ=255)            tCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGtt                                                                                                                                       <  3:284249/149‑1 (MQ=255)               aGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGAc                                                                                                                                    <  4:213133/149‑1 (MQ=255)                  gcCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCt                                                                                                                                  >  4:228441/1‑148 (MQ=255)                    cTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCAt                                                                                                                               <  5:268416/149‑1 (MQ=255)                           aTTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACg                                                                                                                        >  1:161342/1‑149 (MQ=255)                               gcgcCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCg                                                                                                                    <  4:194311/149‑1 (MQ=255)                                   ccTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCCTCCATGGCATGTTGCCCTCATCGATACGGTCGag                                                                                                                  >  6:5162/1‑146 (MQ=255)                                   ccTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATcc                                                                                                                                                 <  1:53364/116‑1 (MQ=255)                                   ccTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATcc                                                                                                                                                 >  2:53364/1‑116 (MQ=255)                                    cTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAg                                                                                                               >  5:1370/1‑149 (MQ=255)                                    cTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAg                                                                                                               <  8:273650/149‑1 (MQ=255)                                       gCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGc                                                                                                             <  3:228441/148‑1 (MQ=255)                                         gtcgccatcgacagcctgatggtacgcctgttcgaccgtatcgatgaggtcaacatgccatggATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCAt                                                                                                                                               >  2:165160‑M1/64‑112 (MQ=255)                                         gtcgccatcgacagcctgatggtacgcctgttcgaccgtatcgatgaggtcaacatgccatggATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCAt                                                                                                                                               <  1:165160‑M1/49‑1 (MQ=255)                                              cTGGCGACAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGACGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATc                                                                                                     <  4:20242/149‑1 (MQ=255)                                                 gcgcCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAgg                                                                                                  <  1:13939/149‑1 (MQ=255)                                                   gcCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCt                                                                                                <  6:1370/149‑1 (MQ=255)                                                     cAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGt                                                                                              <  3:194952/149‑1 (MQ=255)                                                          cAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATg                                                                                         >  7:126711/1‑149 (MQ=255)                                                           aGACTGCACCATCAGCGTAGTTTAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATgg                                                                                        <  3:250289/149‑1 (MQ=255)                                                              cTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGCGTAGGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATgg                                                                                        <  1:292111/149‑1 (MQ=255)                                                               tGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGAc                                                                                    <  2:161342/149‑1 (MQ=255)                                                                 cACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGAc                                                                                    <  8:126711/147‑1 (MQ=255)                                                                 cACCATCAGCGGAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACGTCATCGCTACGGTCGAACAGGCGTCCCAGCAGGCTGGCGATGGCgcc                                                                                    >  8:332519/1‑145 (MQ=255)                                                                  aCCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCAc                                                                                 <  2:110511/149‑1 (MQ=255)                                                                          cGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTc                                                                         >  1:173658/1‑149 (MQ=255)                                                                                 taAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGc                                                                                       <  5:326137/128‑1 (MQ=255)                                                                                 taAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGc                                                                                       >  6:326137/1‑128 (MQ=255)                                                                                 taAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCAGCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCtt                                                                  >  7:52928/1‑149 (MQ=255)                                                                                 taAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATAGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCtt                                                                  >  7:54684/1‑149 (MQ=255)                                                                                    gACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTtca                                                                >  8:177178/1‑148 (MQ=255)                                                                                            cAGGTCCAGCAAATGCTCGCCGAACGGCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGTCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACATCGATTCGCGGCTTCATCACACCTc                                                       <  4:32467/149‑1 (MQ=255)                                                                                               gTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTGGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAg                                                    >  5:312529/1‑149 (MQ=255)                                                                                               gTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAg                                                    >  7:154309/1‑149 (MQ=255)                                                                                                   aGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCa                                                <  2:173658/149‑1 (MQ=255)                                                                                                       atggatgctcgccgccagccggcgcttgagcgcggcgttcggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGAc                                                                                    <  1:165160‑M2/63‑1 (MQ=255)                                                                                                       atggatgctcgccgccagccggcgcttgagcgcggcgttcggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGAc                                                                                    >  2:165160‑M2/50‑112 (MQ=255)                                                                                                         TGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAgg                                          >  8:157851‑M1/1‑149 (MQ=255)                                                                                                           CTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAggg                                         >  2:33120‑M1/1‑148 (MQ=255)                                                                                                            TCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGcc                                       >  8:154309‑M1/1‑149 (MQ=255)                                                                                                              GCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGcc                                       >  6:312529‑M1/1‑147 (MQ=255)                                                                                                               tcgccgccagccggcgcttgagcgcggctggcggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGcc                                       >  4:345389‑M2/42‑149 (MQ=255)                                                                                                               tcgccgccagccggcgcttgagcgcggcgttcggcgagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGACTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGcc                                       >  1:291229‑M2/42‑149 (MQ=255)                                                                                                                   aCGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGaa                                >  4:59121/1‑149 (MQ=255)                                                                                                                      ccgcGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCt                             >  1:205762/1‑149 (MQ=255)                                                                                                                          gcTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGATGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCTAGGGCCTGGCGAAACTGccc                         >  6:85084/1‑148 (MQ=255)                                                                                                                                       cTGGG‑‑‑GGCTAGCATCCATGGCATGTTGAACTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCAcc            <  7:332519/149‑1 (MQ=255)                                                                                                                                                  gagcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTc    <  6:314358‑M2/143‑1 (MQ=255)                                                                                                                                                    gcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGt  >  2:159971‑M2/5‑149 (MQ=255)                                                                                                                                                    gcatCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGt  >  7:181689‑M2/5‑149 (MQ=255)                                                                                                                                                        |                                                                                                                                                 GCTGCAAGCCGTCCAGCGCCTGAGCGATTCGCGCCCTGGCCTCGCCTGGCGCCAGGGCAGACTGCACCATCAGCGTAGTATAAGACGGCACCAGGTCCAGCAAATGCTCGCCGAACGCCGCGCTCAAGCGCCGGCTGGC‑‑‑GGCGAGCATCCATGGCATGTTGACCTCATCGATACGGTCGAACAGGCGTACCATCAGGCTGTCGATGGCGACCACTTCGATTCGCGGCTTCATCACACCTCCAGCCCATCGAGGGCCTGGCGAATCTGCCGCACCGCCGCCACCGAACTGTCGT  >  NC_002947/5196280‑5196572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.