New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5570627 =	41 (0.730)	4 (0.080)	3/240	NT	10.2%	coding (314/1065 nt)	queG	epoxyqueuosine reductase
	?	NC_002947	5570670 =	32 (0.610)					coding (357/1065 nt)	queG	epoxyqueuosine reductase

TCCCCGGCACGGTACGCGTGGTCTCGCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAA  >  NC_002947/5570522‑5570810                                                                                                                                                     |                                                                                                                                             ccggcctgttcggccagggctttttccagtaccggggcgctgtccacgaaggcgcggtagccgaacgggccgatggcttcctggatgcggtcggcgaggaactgcACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTg                                                                                                                                              >  4:99154‑M1/106‑149 (MQ=255)   cccGGCACGGTACGCGTGGTCTCGCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTg                                                                                                                                              >  3:78032/1‑147 (MQ=255)   cccGGCACGGTACGCGTGGTCTCGCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGGCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGc                                                                                                                                             <  7:70032/148‑1 (MQ=255)        cACGGTACGCGTGGTCTCGCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCTCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGACTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTcc                                                                                                                                       <  1:229636/149‑1 (MQ=255)         ttcggccagggctttttccagtaccggggcgctgtccacgaaggcgcggtagccgaacgggccgatggcttcctggatgcggtcggcgaggaactgcACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTcc                                                                                                                                       >  6:280224‑M1/98‑148 (MQ=255)             tACGCGTGGTCTCGCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGcc                                                                                                                                  <  6:324841/149‑1 (MQ=255)                  gTGGTCTCGCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCg                                                                                                                             >  3:218432/1‑149 (MQ=255)                          gCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATcc                                                                                                                        <  3:84647/146‑1 (MQ=255)                              cGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGaa                                                                                                                   <  4:218432/147‑1 (MQ=255)                               gTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGcc                                                                                                                <  5:11898/149‑1 (MQ=255)                               gTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGcc                                                                                                                <  3:51905/149‑1 (MQ=255)                                         ccTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGt                                                                                                      >  8:98772/1‑149 (MQ=255)                                            gCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCACCGGCCCGTTCg                                                                                                   >  3:284036/1‑149 (MQ=255)                                             cccGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCACCGGCCCGTTCg                                                                                                   <  4:284036/148‑1 (MQ=255)                                                    acacGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGCAAGCCATCGGCCCGTTCGGCTACcgc                                                                                           <  5:68784/149‑1 (MQ=255)                                                      acGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCgcgc                                                                                         <  8:296187/149‑1 (MQ=255)                                                              ggCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTg                                                                                  >  8:329376/1‑148 (MQ=255)                                                                cgcAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGa                                                                                >  2:100087/1‑148 (MQ=255)                                                                   aGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAgc                                                                            >  6:184675/1‑149 (MQ=255)                                                                            cccAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTa                                                                   >  2:332256/1‑149 (MQ=255)                                                                              cAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACt                                                                 >  2:193664/1‑149 (MQ=255)                                                                              cAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACt                                                                 <  1:100087/149‑1 (MQ=255)                                                                              cAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACt                                                                 <  4:78032/149‑1 (MQ=255)                                                                                gCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTgg                                                               <  7:98772/149‑1 (MQ=255)                                                                                         ggCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGccc                                                      >  5:155724/1‑149 (MQ=255)                                                                                                 tgtCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGaa                                              <  1:193664/149‑1 (MQ=255)                                                                                                  gtCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGCCCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGCCAGCGCCCCGGTACTGGAAAAAGCCATGGCCGaa                                              >  1:122817/1‑148 (MQ=255)                                                                                                  ggaactgcacgcgcttgcgcaccagcttgtggtaatcccggccaagcgcgtGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGaa                                              >  6:280224‑M2/52‑148 (MQ=255)                                                                                                   tCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGaa                                              >  4:297890/1‑147 (MQ=255)                                                                                                     aCGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAgg                                          >  1:221569/1‑149 (MQ=255)                                                                                                     aCGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAgg                                          >  6:354950/1‑149 (MQ=255)                                                                                                         cacgcgcttgcgcaccagcttgtggtaatcccggccaagcgcgtGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCgg                                      >  4:99154‑M2/45‑149 (MQ=255)                                                                                                           CGCGCTTGGCCGGGATTACCAAAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGc                                    <  8:87411‑M1/149‑1 (MQ=255)                                                                                                              gcttgcgcaccagcttgtggtaatcccggccaagcgcgtGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTgg                                 <  5:280224‑M2/110‑1 (MQ=255)                                                                                                              gcttgcgcaccagcttgtggtaatcccggccaagcgcgtGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTgg                                 <  3:99154‑M2/110‑1 (MQ=255)                                                                                                                  GGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTGGGtt                              >  5:184675‑M1/1‑148 (MQ=255)                                                                                                                      gggATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTTGGTTGGATc                         <  1:16957/149‑1 (MQ=255)                                                                                                                            aCCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTg                                  <  2:198740/134‑1 (MQ=255)                                                                                                                            aCCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTg                                  >  1:198740/1‑134 (MQ=255)                                                                                                                             ccACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTGGGTTGGATCGGCAAg                   >  8:266292/1‑148 (MQ=255)                                                                                                                                     tGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGaaaaa                                                          <  1:178574/101‑1 (MQ=255)                                                                                                                                     tGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGaaaaa                                                          >  2:178574/1‑101 (MQ=255)                                                                                                                                       gTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACgctgct        >  6:324351/1‑149 (MQ=255)                                                                                                                                       gTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACgctgct        <  5:354950/149‑1 (MQ=255)                                                                                                                                             aagcgcgtGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTGCTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCaa  >  7:198442‑M2/9‑149 (MQ=255)                                                                                                                                             aagcgcgtGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGCACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTTaa  >  7:104501‑M2/9‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                             TCCCCGGCACGGTACGCGTGGTCTCGCTACGTATGGACTACCTGCCCGGCGACACGCAGATGGCGCAGCGCCTTGCCCAGCCCGAGAAGGCCTACGTGTCACGCTACGCGCTTGGCCGGGATTACCACAAGCTGGTGCGCAAGCGCGTGCAGTTCCTCGCCGACCGCATCCAGGAAGCCATCGGCCCGTTCGGCTACCGCGCCTTCGTGGACAGCGCCCCGGTACTGGAAAAAGCCCTGGCCGAACAGGCCGGGCTGGGTTGGATCGGCAAGAACACGCTGCTGCTCAA  >  NC_002947/5570522‑5570810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.