New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5594092 =	38 (0.670)	4 (0.090)	4/202	NT	13.2%	intergenic (‑39/+106)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase
	?	NC_002947	5594185 =	23 (0.520)					intergenic (‑132/+13)	PP_4921/thiC	NCS1 family transporter/phosphomethylpyrimidine synthase

TGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCA  >  NC_002947/5594045‑5594328                                                                                                                                             |                                                                                                                                                tGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCAATCACCGCAGTGCTTGCTTAGCGGGCAAGCCCGCTCCCCCACGGTAAGGtgcgg                                                                                                                                         >  1:213482/1‑147 (MQ=37)      ccttggtcttgCCCGCTGGAGTGATGTTACGGGCCATACCCCACCGGGTGGGAGCGGGCTGGCCCGCTAACACCGCCAACGCGGGTGCCATCCCCCGCAGTGTTTGCTTCGCGGGAAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGt                                                                                                                                     <  8:85455/145‑1 (MQ=255)        ctgggcatgGCCGCAGGAGTGATGTTAAGGGGCATCCACCACCCTGGGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGGGCTGGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                                                  <  7:165364/148‑1 (MQ=25)        atggtcatgTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTa                                                                                                                                  <  5:262702/149‑1 (MQ=255)              atgGCCGCAGGTGTGATGTTATGTGGCATACACCACCCTGGGGGAGCGGGCTTGCCCGCTAACACCGGCAAAGCGGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGAAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACtt                                                                                                                             <  4:36124/148‑1 (MQ=37)                 tCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTtgtg                                                                                                                         >  5:369586/1‑149 (MQ=255)                   cGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTgg                                                                                                                        >  7:178983/1‑148 (MQ=255)                         agttaggTTACGTGGCATACCCCCCCCTGTGGGCGCGGGCTGGCCCGCGAACACCGGCAACGCCGGTGCCATGCACCGCTGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAgct                                                                                                                 <  8:178983/143‑1 (MQ=25)                               gTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGc                                                                                                           >  2:230165/1‑149 (MQ=255)                               gTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGc                                                                                                           >  7:202323/1‑149 (MQ=255)                                  aaGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCCCAGGGTAAGGTGGTGCGGGTTAGACTTTGTGGTACAGCAGGCTGCCtt                                                                                                        >  7:114264/1‑149 (MQ=255)                                         aTACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCg                                                                                                 <  3:230877/149‑1 (MQ=255)                                            caccacCCTGTGGGAGCGGGCTTGCCCGCTAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGa                                                                                               <  1:231063/148‑1 (MQ=255)                                                  CCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTc                                                                                        <  5:269345‑M1/149‑1 (MQ=255)                                                     GTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTGCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGc                                                                                     >  6:369586‑M1/1‑149 (MQ=255)                                                      gaccagtgggCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGc                                                                                     <  5:182095/141‑1 (MQ=255)                                                                CTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCa                                                                          <  5:62915‑M1/149‑1 (MQ=255)                                                                     ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTtg                                                                                                                           >  3:223018‑M2/73‑95 (MQ=255)                                                                     ccgcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTtg                                                                                                                           <  4:223018‑M2/23‑1 (MQ=255)                                                                     CCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCt                                                                     <  1:229986‑M1/149‑1 (MQ=255)                                                                       gcgaagcaagcactgcggtgcatggcaccggctttgccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTg                                                                   >  7:92809‑M2/71‑149 (MQ=255)                                                                       GCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCtt                                                                    <  8:130725‑M1/148‑1 (MQ=255)                                                                         GAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt                                                                 <  5:235550‑M1/149‑1 (MQ=255)                                                                           ACACCGGCAAAGCCGGTGCCATGCACCGCTGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCt                                                                 >  2:213482‑M1/1‑147 (MQ=255)                                                                           ACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCg                                                               <  7:198241‑M1/149‑1 (MQ=255)                                                                             acCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCACGAc                                                             >  6:117520/1‑149 (MQ=255)                                                                             acCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTATAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCgcc                                                             >  1:113620/1‑147 (MQ=255)                                                                              ccGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGAcc                                                            <  6:269345/149‑1 (MQ=255)                                                                                   aaaGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTca                                                        >  3:339262/1‑148 (MQ=255)                                                                                               aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                                           >  2:67429/1‑149 (MQ=255)                                                                                               aTGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCCCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTc                                           >  1:324749/1‑149 (MQ=255)                                                                                                  cACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGAt                                        >  3:117524/1‑149 (MQ=255)                                                                                                      gCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg                                    <  7:130725/149‑1 (MQ=255)                                                                                                      gCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTg                                    <  4:117524/149‑1 (MQ=255)                                                                                                           ccggtgttcgcgggcaagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGc                               <  8:92809‑M2/115‑1 (MQ=255)                                                                                                            cttgcttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACa                                                                                                                    >  2:90437/1‑63 (MQ=255)                                                                                                            cttgcttCGCGGGCAAGCCCGCTCCCACAGCGTAAGGTGCTGCGGTTTAGACTTTGTGGTACa                                                                                                                    <  1:90437/63‑1 (MQ=255)                                                                                                                cttCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGATCGTCACATCCACGGCCTCGATCTTGGCAGCGTAc                           <  1:230165/148‑1 (MQ=255)                                                                                                                          aagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATc                                                    >  1:1202‑M2/20‑113 (MQ=255)                                                                                                                          aagcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATc                                                    <  2:1202‑M2/94‑1 (MQ=255)                                                                                                                          aagcccgctcccacagggtAAGGTGCTGCGGGTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTc                >  5:123160‑M2/20‑149 (MQ=255)                                                                                                                           agcccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTcc               <  6:62915‑M2/131‑1 (MQ=255)                                                                                                                              ccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCa                                 <  3:97411‑M2/113‑1 (MQ=255)                                                                                                                              ccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCa                                 >  4:97411‑M2/16‑128 (MQ=255)                                                                                                                              ccgctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTgg            <  2:229986‑M2/134‑1 (MQ=255)                                                                                                                                 ctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTg         <  2:232625‑M2/137‑1 (MQ=255)                                                                                                                                 ctcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTg         <  3:192314‑M2/137‑1 (MQ=255)                                                                                                                                  tcccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGa        >  5:80521‑M2/12‑149 (MQ=255)                                                                                                                                    ccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCtt                                     <  7:231334‑M2/109‑1 (MQ=255)                                                                                                                                    ccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCtt                                     >  8:231334‑M2/10‑118 (MQ=255)                                                                                                                                    ccacagggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATc      >  7:194673‑M2/10‑149 (MQ=255)                                                                                                                                        agggtAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCa  <  8:202323‑M2/144‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                TGATGTCATGGTCATGTCCGCAGGAGTGATGTTAAGTGGCATACACCACCCTGTGGGAGCGGGCTTGCCCGCGAACACCGGCAAAGCCGGTGCCATGCACCGCAGTGCTTGCTTCGCGGGCAAGCCCGCTCCCACAGGGTAAGGTGCTGCGGTTTAGACTTTGTGGTACAGCTGGCTGCCTTCCTGGCGGAACCGCTCGGCCTGCTCACGCATGCCTTGCTCGACCGTCACATCCACGGCCTCGATCTTGGCAGCGTACTCACGCACTTCCTGGGTGATCTTCA  >  NC_002947/5594045‑5594328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.