New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5862919	49 (0.870)	4 (0.080)	4/238	NT	8.7%	intergenic (‑131/+100)	fbpC/PP_5138	ABC transporter ATP‑binding protein/LysR family transcriptional regulator
	?	NC_002947	= 5862993	39 (0.750)					intergenic (‑205/+26)	fbpC/PP_5138	ABC transporter ATP‑binding protein/LysR family transcriptional regulator

GCTTTAAGGCAAAAGCCGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATACAGGTACTCATGCATCA  >  NC_002947/5862847‑5863119                                                                                                                                                    |                                                                                                                                  gCTTTAAGGCAAAAGCCGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCGGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCta                                                                                                                                 <  3:55616‑M2/149‑3 (MQ=255)   tttAAGGCAAAAGCCGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCtacc                                                                                                                               <  8:318751‑M2/149‑5 (MQ=255)      aaGGCAAAACCCGGGGATAGGGGGATAGGTAGATTTACTAGGGGCCTTTACCGGCCGGATCGCGGGTAAACCCGCTCCTACAACGGAATGCCGGTTCCCACGAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTAccc                                                                                                                              <  1:80082/148‑1 (MQ=255)            aaaGCCGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACaa                                                                                                                     <  5:338660/149‑1 (MQ=255)            aaaCCCGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATCCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACaa                                                                                                                     <  5:198737/149‑1 (MQ=255)             aaGCCGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCGGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAg                                                                                                                    <  4:55616/149‑1 (MQ=255)               gCCGGTGTTAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGc                                                                                                                   >  6:70534/1‑148 (MQ=255)                ccGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCa                                                                                                                 <  6:131124/149‑1 (MQ=255)                ccGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCAGGTACGCAGAAATGCAGGAGCGGGGATACCA‑GCGAACAAGca                                                                                                                  >  6:293371/1‑147 (MQ=255)                   gtgtTAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAac‑a                                                                                                             <  5:70534/149‑1 (MQ=255)                        aGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAac‑ataatc                                                                                                        >  4:210232/1‑144 (MQ=255)                         gTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAAt                                                                                                        <  5:6977/148‑1 (MQ=255)                                      aTTTAGTAGTGGCCTGTAGCGGCCTCTTCGCGGGAAAACCCGCTCCTACAACGGATTGGGTGTTCGCA‑GAAATGGAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACTAGCCAAC‑ACGAATCTAGAACTGCGaa                                                                                           <  6:314151/148‑1 (MQ=255)                                      aTTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGAAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAAc                                                                                          >  2:296806/1‑149 (MQ=255)                                         tagtagTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCg                                                                                        <  4:304524/148‑1 (MQ=255)                                         tagtagTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCg                                                                                        <  4:299563/148‑1 (MQ=255)                                           gtagtGGCCTGTACCGGCCTCTTCGCGTGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGc                                                                                      <  8:100264/148‑1 (MQ=255)                                           gtagtGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGc                                                                                      <  7:318751/148‑1 (MQ=255)                                            tagtGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGAA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCa                                                                                    <  1:156158/149‑1 (MQ=255)                                                      tACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTgc                                                                            <  5:21006/147‑1 (MQ=255)                                                         cGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCAc                                                                      >  2:98353/1‑149 (MQ=255)                                                                ttCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAg                                                                >  2:328069/1‑148 (MQ=255)                                                                ttCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGGCtacccgcgaagaggccggtacaggccactactaaatctacctataccactatcaccggcttttgt                                                                  <  5:324718‑M2/149‑66 (MQ=255)                                                                  cgctGGAAAACCCGCTCCTACAACGGAATGCGTGTTCTCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAgg                                                               <  5:293371/147‑1 (MQ=255)                                                                     gggTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCtacccgcgaagaggccggtacaggccactactaaatctacctataccactatcaccggctttt                                                                    >  7:267541‑M2/1‑79 (MQ=255)                                                                     gggTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCtacccgcgaagaggccggtacaggccactactaaatctacctataccactatcaccggctttt                                                                    <  8:267541‑M2/142‑64 (MQ=255)                                                                     gggTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCaa                                                                                                                >  7:260958/1‑97 (MQ=255)                                                                     gggTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCaa                                                                                                                <  8:260958/97‑1 (MQ=255)                                                                      cgtAAACCCGCTCCTACACCGGAATGCGTGTTCGCA‑GAAATGCAGGCCTGCATGTACGCAGAAATGCAGGAGCGGGTCtacccgcgaagaggccggtacaggccactactaaatctacctataccactatcaccggcttttgtcttaaa                                                            >  6:324718‑M2/2‑78 (MQ=255)                                                                             ccGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTCCCG‑GCGAACACGCCAAG‑ACGAATCTAGAACTGCGAACCGGCCGCTTCCTGCG‑CCCCCCCCAGGAATGCCGCCGGcg                                                  >  2:72669/1‑148 (MQ=255)                                                                             ccGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTgcg‑c                                                                         >  1:244460/1‑126 (MQ=255)                                                                             ccGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTgcg‑c                                                                         <  2:244460/126‑1 (MQ=255)                                                                                   cTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCaa                                                                                                                <  1:4294/83‑1 (MQ=255)                                                                                   cTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCaa                                                                                                                >  2:4294/1‑83 (MQ=255)                                                                                    tACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGc                                           >  2:106745/1‑149 (MQ=255)                                                                                     aCAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGcc                                          >  7:207179/1‑149 (MQ=255)                                                                                       aaCGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTg                                        >  3:105970/1‑149 (MQ=255)                                                                                            aaTGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATTCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGcgcc                                   <  4:4371/149‑1 (MQ=255)                                                                                                cGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTc                               <  7:84918/149‑1 (MQ=255)                                                                                                 gtgtTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTcc                              >  2:60431/1‑149 (MQ=255)                                                                                                      cGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCa                          <  1:60431/148‑1 (MQ=255)                                                                                                       gCA‑TAAATGGATGCATGCATTTAAGAATTAATTCAGGAGGGGGTCTACCCGGCTTATAAGAATACTAAAACTCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTc                           <  1:296806/148‑1 (MQ=255)                                                                                                       gCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCT‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAg                         <  4:22460/148‑1 (MQ=255)                                                                                                               tGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCGACCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATAc                  <  1:98353/149‑1 (MQ=255)                                                                                                               tGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATACa                 <  1:328069/149‑1 (MQ=255)                                                                                                                 cAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATACAg                <  3:55785/148‑1 (MQ=255)                                                                                                                      atgcatgTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCCCCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATACAGGTACt           >  6:215633/1‑148 (MQ=255)                                                                                                                             tACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATACAGGTACTCATGCAt    >  6:129500/1‑148 (MQ=255)                                                                                                                             tACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑A‑TAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATACAGGTACTCATGCATCa  <  3:210232/149‑1 (MQ=255)                                                                                                                                gCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAgg                        <  7:37754/125‑1 (MQ=255)                                                                                                                                gCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAgg                        >  8:37754/1‑125 (MQ=255)                                                                                                                                                  gTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCtt                            <  7:57476/103‑1 (MQ=255)                                                                                                                                                  gTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCtt                            >  8:57476/1‑103 (MQ=255)                                                                                                                                                    |                                                                                                                                  GCTTTAAGGCAAAAGCCGGTGATAGTGGTATAGGTAGATTTAGTAGTGGCCTGTACCGGCCTCTTCGCGGGTAAACCCGCTCCTACAACGGAATGCGTGTTCGCA‑GAAATGCAGGCATGCATGTACGCAGAAATGCAGGAGCGGGTCTACCC‑GCGAACAAGCCAAC‑ACGAATCTAGAACTGCGAACCGGCCACTTCCTGCG‑CCACCCCCAGGAATGCCGCCGGCAACCGGGCCTGGCGCCGCTCCTTCAGGCAATACAGGTACTCATGCATCA  >  NC_002947/5862847‑5863119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.