| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,988,362 | G→C | 10.3% | intergenic (+32/+62) | ycgR → / ← PP_4398 | flagellar brake protein YcgR/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,988,362 | 0 | G | C | 10.3% | 255.4 / 16.6 | 87 | intergenic (+32/+62) | ycgR/PP_4398 | flagellar brake protein YcgR/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base G (37/41); new base C (4/5); total (41/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 | |||||||||||
ACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGGCGCC > NC_002947/4988214‑4988508 | accaccTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACctg > 3:333725/1‑149 (MQ=255) cTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑g > 5:57745/1‑149 (MQ=255) ggCGTGCGTTTCCACAACCTCAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGAGAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGt < 3:25847/149‑1 (MQ=255) gcgtgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGtt < 6:57745/149‑1 (MQ=255) gcgtgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGtt < 8:243891/149‑1 (MQ=255) gcgtgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGtt < 2:264447/149‑1 (MQ=255) gcgtgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGtt > 7:243891/1‑149 (MQ=255) tgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCTTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTCAGCA‑GGTGGCGTTTTc < 1:68265/149‑1 (MQ=255) tgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCATCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTTTTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTCAGCA‑GGTGGCGTTTTc < 7:157440/149‑1 (MQ=255) tgcgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTc < 4:232704/149‑1 (MQ=255) cgtTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCAt < 2:183973/149‑1 (MQ=255) tttCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCTGTAAAACAGAAAACGCCACCTGCTGA‑g < 4:219678/134‑1 (MQ=255) tttCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑g > 3:219678/1‑134 (MQ=255) tCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTCAGCA‑GGTGGCGTTTTctgttt < 1:114686/148‑6 (MQ=39) ccACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTtgtg > 8:101192/1‑149 (MQ=255) ccACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTtgt < 3:298762/148‑1 (MQ=255) ccACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTtgt > 4:298762/1‑148 (MQ=255) cacaACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGtttt > 7:204874/1‑140 (MQ=255) cacaACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGtttt < 8:204874/140‑1 (MQ=255) cacaACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTCAGCA‑GGTGGCGtttt > 3:118177/1‑140 (MQ=255) cacaACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTCAGCA‑GGTGGCGtttt < 4:118177/140‑1 (MQ=255) aaCCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTc < 4:224648/149‑1 (MQ=255) aaCCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTc > 6:176401/1‑149 (MQ=255) cTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTctgc > 1:215441/1‑149 (MQ=255) ggCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTgctgggctg < 2:215441/149‑1 (MQ=255) ggCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTgctgggctg > 3:224208/1‑149 (MQ=255) cgcagcgcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGACGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCt > 1:113037/1‑149 (MQ=255) gcagcgcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCtt > 5:128996/1‑149 (MQ=255) gcagcgcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCtt < 7:101192/149‑1 (MQ=255) gcgcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGGTCGACAAGGACGATTATTGATCGGCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTcgc > 1:266493/1‑149 (MQ=255) cgcaAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTcgcg > 6:336355/1‑149 (MQ=255) aTCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTaaa > 7:106260/1‑149 (MQ=255) tCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTaaa > 6:337097/1‑148 (MQ=255) cGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAAcc > 2:228760/1‑149 (MQ=255) agagTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTAGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGAGGCGTTTTCATTTGTGTTTCTGCTGGGCTGTCCGCTTCGCGGGTAAACCCg > 7:132857/1‑149 (MQ=255) ccAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCgg < 3:335016/127‑1 (MQ=255) ccAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCgg > 4:335016/1‑127 (MQ=255) ccAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGAc < 1:228760/149‑1 (MQ=255) gCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTg > 6:239012/1‑149 (MQ=255) cTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGc > 1:10784/1‑149 (MQ=255) cAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCt < 6:128996/147‑1 (MQ=255) cAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCt < 2:58051/147‑1 (MQ=255) cAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTg < 4:224208/148‑1 (MQ=255) aGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGAc < 2:10784/149‑1 (MQ=255) aGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGAc < 4:121200/149‑1 (MQ=255) aGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTc < 6:139665/149‑1 (MQ=255) ggCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTc < 6:307/148‑1 (MQ=255) gcgcGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAg > 3:153418/1‑149 (MQ=255) gcgcGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAg < 4:162110/149‑1 (MQ=255) gcggcgGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGgc < 5:155/149‑1 (MQ=255) cggTTCGACAAGGAGGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCt < 5:337097/149‑1 (MQ=255) ggTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTg > 8:288970/1‑149 (MQ=255) gTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGt < 8:106260/149‑1 (MQ=255) aCAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtgctg > 3:194219/1‑149 (MQ=255) aCAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtgctg > 1:238495/1‑149 (MQ=255) aCAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtgctg > 3:31388/1‑149 (MQ=255) ggACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTgcgcg < 5:336355/149‑1 (MQ=255) gACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTTGGATGGCCGCTTCGCGGGTAACCCCGCTCCTACACGGACTAGCTGACCTCTTCAGGCGCCTGTtgctg > 8:252395/1‑144 (MQ=255) gACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtgctg < 7:252395/144‑1 (MQ=255) gACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTgcgcgc < 6:245332/149‑1 (MQ=255) gATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGAGGGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGccc > 1:254754/1‑149 (MQ=255) ttGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTGATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGAGTTGCTGACCTCTTCAGGCGCCTGTTGCTGGGCGCCCTtctc < 4:333725/148‑1 (MQ=255) ttGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTctct > 3:155792/1‑149 (MQ=255) ttGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTctct > 3:150464/1‑149 (MQ=255) gtcggtcgGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTcc < 3:85729/92‑1 (MQ=255) gtcggtcgGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTcc > 4:85729/1‑92 (MQ=255) tcggtcggTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtg < 1:339316/126‑1 (MQ=255) tcggtcggTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTtg > 2:339316/1‑126 (MQ=255) tcggtcggTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCt < 5:239012/149‑1 (MQ=255) tcggtAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGgt < 5:176401/149‑1 (MQ=255) tcggtAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGgt < 4:31388/149‑1 (MQ=255) gtAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTc > 8:176502/1‑149 (MQ=255) cacaaatgAAAACGCCACCTCAGCA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCt > 6:351580/8‑149 (MQ=39) aaaaCAGAAAACGCCACCTGCTGA‑GGTTGCGTATTCATTTGTGTTTCTGCTGGGCTGGACGCTTCGCGTGTAAACCCCCTCCAAAACCGACTTGCTGACCACTTCCTGCGCATGTTGCTGCGCGACCTTGTATTCATACTCGCTGTCt > 6:226237/1‑148 (MQ=255) aaaCAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAAccc > 6:247685/1‑76 (MQ=255) aaaCAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAAccc < 5:247685/76‑1 (MQ=255) aaaCAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTgcgcgc < 7:100178/124‑1 (MQ=255) aaaCAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTgcgcgc > 8:100178/1‑124 (MQ=255) aaCAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCa < 4:150464/149‑1 (MQ=255) aaCAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCa < 2:113037/149‑1 (MQ=255) aaCAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCa < 4:155792/149‑1 (MQ=255) aGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAgcc < 7:288970/149‑1 (MQ=255) aaaaCGCCACCTCAGCA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAgccgc > 3:69415/1‑149 (MQ=255) aaCGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCa > 3:246066/1‑149 (MQ=255) aaCGCCACCTCAGCA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTctct > 8:121313/1‑124 (MQ=255) aaCGCCACCTCAGCA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTctct < 7:121313/124‑1 (MQ=255) aCGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCAc > 7:300679/1‑149 (MQ=255) ccTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGgcgc < 2:238495/149‑1 (MQ=255) ctgctgA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGGCGcc < 8:223777/149‑1 (MQ=255) | ACCACCTTTGCCGGCGTGCGTTTCCACAACCTGAGCGGGCAGGCGCAGCGCAAGATCGAGAGTTTCGTGTACCAGCTGCAGCGTGAGGCGCGGCGGTTCGACAAGGACGATTATTGATCGTCGGTCGGTAAAACAGAAAACGCCACCTGCTGA‑GGTGGCGTTTTCATTTGTGTTTCTGCTGGGCTGGCCGCTTCGCGGGTAAACCCGCTCCTACACCGACTTGCTGACCTCTTCAGGCGCCTGTTGCTGCGCGCCCTTCTCTTCATCCTCGGTGTCTTCAGCCGCCACCGGCGCC > NC_002947/4988214‑4988508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |