Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,026,754 A→T 7.4% S22C (AGT→TGT)  ocd → ornithine cyclodeaminase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,026,7540AT 7.4% 161.7 / 2.8 54S22C (AGT→TGT) ocdornithine cyclodeaminase
Reads supporting (aligned to +/- strand):  ref base A (22/28);  new base T (2/2);  total (24/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01

GTCGACATGGCTCAACACCAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTGAGAATTTCGCTATCAA  >  NC_002947/5026611‑5026902
                                                                                                                                               |                                                                                                                                                    
gTCGACATGGCTCAACACCAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATc                                                                                                                                                 >  7:266340/1‑149 (MQ=255)
   gACATGGCTCAACACCAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGAt                                                                                                                                              <  5:65793/149‑1 (MQ=255)
           tCAACACCAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTgg                                                                                                                                       >  4:61759/1‑148 (MQ=255)
            cAACACCAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGGGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGa                                                                                                                                      >  1:270984/1‑148 (MQ=255)
              acacCAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGaaaa                                                                                                                                   <  8:266340/149‑1 (MQ=255)
                 ccAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGc                                                                                                                                <  4:32931/149‑1 (MQ=255)
                   aaCGCATCCTCCTCGAAGCTGTCCGCGACCGCCGCCCAGCACGTGCTTAAAGACGCGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGGGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCAt                                                                                                                              <  4:295148/149‑1 (MQ=255)
                    aCGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCAtt                                                                                                                             >  3:158830/1‑149 (MQ=255)
                      gCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTg                                                                                                                           >  2:3640/1‑149 (MQ=255)
                           atcCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCg                                                                                                                      >  3:208741/1‑149 (MQ=255)
                              cTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCt                                                                                                                    <  3:71167/148‑1 (MQ=255)
                              cTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCAATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCt                                                                                                                    <  2:139196/148‑1 (MQ=255)
                               cacgtgCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTgg                                                                                                                  >  1:83744/6‑149 (MQ=255)
                                 gAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGc                                                                                                                 <  2:65832/148‑1 (MQ=255)
                                  aaGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCa                                                                                                               <  6:147262/149‑1 (MQ=255)
                                     cTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCagag                                                                                                            >  3:333439/1‑149 (MQ=255)
                                          cgcgACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCTGAGGCa                                                                                                         >  8:241104/1‑147 (MQ=255)
                                             gACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTg                                                                                                    <  4:333439/149‑1 (MQ=255)
                                              aCCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTgg                                                                                                   <  3:147291/149‑1 (MQ=255)
                                              aCCGCAGCCCAGCACGTGCTTAAAGTGGTGCCATGTTAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCATAGGCAAAGTgg                                                                                                   <  3:179642/149‑1 (MQ=255)
                                                  ccgccCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCAt                                                                                               >  5:200309/1‑149 (MQ=255)
                                                   cgccCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATg                                                                                              >  4:350269/1‑149 (MQ=255)
                                                       cAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGt                                                                                          >  5:76200/1‑149 (MQ=255)
                                                                       agatGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGa                                                                          <  5:245997/146‑1 (MQ=255)
                                                                        ggTGCCATGTGATCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGa                                                                          <  1:277794/148‑1 (MQ=255)
                                                                        ggTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGAc                                                                         <  2:270984/149‑1 (MQ=255)
                                                                            ccATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACAtct                                                                     >  5:159773/1‑149 (MQ=255)
                                                                                 tgAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGa                                                                 <  2:83744/148‑1 (MQ=255)
                                                                                       aaGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCa                                                                                                <  6:307249/111‑1 (MQ=255)
                                                                                       aaGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCa                                                                                                >  5:307249/1‑111 (MQ=255)
                                                                                       aaGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGt                                                                              >  2:187251/1‑129 (MQ=255)
                                                                                       aaGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGt                                                                              <  1:187251/129‑1 (MQ=255)
                                                                                         gTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATgg                                                        <  6:76200/149‑1 (MQ=255)
                                                                                                  cTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACAt                                                                       <  3:202610/125‑1 (MQ=255)
                                                                                                  cTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACAt                                                                       >  4:202610/1‑125 (MQ=255)
                                                                                                     aaCCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGAc                                              <  3:61759/147‑1 (MQ=255)
                                                                                                     aaCCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGAc                                              <  6:200309/147‑1 (MQ=255)
                                                                                                        cAACGCGAAATCCGTGAGTGCGTAACGCCCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCa                                          >  2:126979/1‑148 (MQ=255)
                                                                                                               aaaTCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCt                                  >  1:96446/1‑149 (MQ=255)
                                                                                                                        aGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGcc                          <  4:101033/148‑1 (MQ=255)
                                                                                                                        aGTGCGTAACGCCCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCa                         <  1:126979/149‑1 (MQ=255)
                                                                                                                         gTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGcc                                                                                            <  5:135072/81‑1 (MQ=255)
                                                                                                                         gTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGcc                                                                                            >  6:135072/1‑81 (MQ=255)
                                                                                                                          tGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGa                       >  6:97182/1‑149 (MQ=255)
                                                                                                                            cGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGAc                      <  2:96446/148‑1 (MQ=255)
                                                                                                                                tacatCGATACTGTCTGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGTCAAAGTGGTCATGCAGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACTTCAACACCGCATACCTGCCAGACAtt                   >  6:88306/5‑147 (MQ=255)
                                                                                                                                tacatCGATACTGTCTGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCGGAGCTCAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCGAGACCTTga                 <  5:88306/145‑1 (MQ=255)
                                                                                                                                aCGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTga                 <  5:363516/149‑1 (MQ=255)
                                                                                                                                aCGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTga                 <  4:315335/149‑1 (MQ=255)
                                                                                                                                aCGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTga                 <  4:158830/149‑1 (MQ=255)
                                                                                                                                  gCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTgag                >  2:239181/1‑148 (MQ=255)
                                                                                                                                  catCGATACTGTCTGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCt                    >  4:165112/3‑144 (MQ=255)
                                                                                                                                  catCGATACTGTCTGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCt                    <  3:165112/142‑1 (MQ=255)
                                                                                                                                      gATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTGAGAAttt           >  8:297423/1‑149 (MQ=255)
                                                                                                                                             acagTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTGAGAATTTc          >  2:50214/1‑143 (MQ=255)
                                                                                                                                             acagTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTGAGAATTTc          <  1:50214/143‑1 (MQ=255)
                                                                                                                                               agTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGACATTCCTTCAATACTCCGGTTAGACATCTCCGAGCAAAATGGCGATGTGGACGTCAAACCCGCTTACCTGCCAGACCTTGAGAATTTCGCTATCat  <  7:124338/149‑2 (MQ=255)
                                                                                                                                               |                                                                                                                                                    
GTCGACATGGCTCAACACCAACGCATCATCCTGGAAGCTGTGCGCGACCGCCGCCCAGCACGTGCTTAAAGAGGTGCCATGTGAGCGAAGTCCTTCTGCTTAACCAACGCGAAATCCGTGAGTGCGTAACGCTCGATACAGACAGTATCGATGTAGTGGAAAACGCATTTGCATCGCTGGCCAGAGGCAAAGTGGTCATGCCGTCAATCCTCCGGTTAGACATCTCCGAGCACAATGGCGAGGTGGACGTCAAAACCGCTTACCTGCCAGACCTTGAGAATTTCGCTATCAA  >  NC_002947/5026611‑5026902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑