Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,194,359 | A→C | 9.8% | E227A (GAG→GCG) ‡ | PP_4574 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,194,359 | 0 | A | C | 9.8% | 106.6 / 5.2 | 41 | E227A (GAG→GCG) ‡ | PP_4574 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (16/21); new base C (2/2); total (18/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.81e-01 |
GCTTGGCACCCGCAACATCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAGCACCTGGAGTATTACTACTTCCACAATTGCGTTTAT > NC_002947/5194216‑5194504 | gCTTGGCACCCGCAACATCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAgcggc < 1:359265/149‑1 (MQ=255) ggCACCCGCAACATCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGgcgc < 5:27742/147‑1 (MQ=255) ggCACCCGCAACATCAAGCTGGCCCTGCGCAGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCaa > 3:78083/1‑149 (MQ=255) gCACCCGCAACATCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAac < 1:54691/149‑1 (MQ=255) cGCAACATCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGt < 4:118398/149‑1 (MQ=255) aTCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAAGGGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCa > 1:69282/1‑137 (MQ=255) aTCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCa < 2:69282/136‑1 (MQ=255) aTCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAgct > 7:341643/1‑149 (MQ=255) aaGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCGCTCGGGGCGCatctgga < 5:188150/139‑7 (MQ=255) aaGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCGCTCGGGGCGCatctgga > 6:188150/1‑133 (MQ=255) gCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCtgctgttgc < 2:10506/148‑1 (MQ=255) cTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTgctgttgctgtt < 3:283202/149‑1 (MQ=255) cgcCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCg < 1:222773/148‑1 (MQ=255) cGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACAt > 3:328114/1‑149 (MQ=255) gCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTg < 1:144498/149‑1 (MQ=255) gCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACa < 8:47985/141‑1 (MQ=255) gCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACa > 7:47985/1‑141 (MQ=255) gCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGt > 5:178852/1‑149 (MQ=255) cAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGtt < 8:109355/149‑1 (MQ=255) ttCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCGCTCGGGGCGCatctgg < 7:38062/111‑6 (MQ=255) ttCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCGCTCGGGGCGCatctgg > 8:38062/1‑106 (MQ=255) ggCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGt < 4:78083/149‑1 (MQ=255) ccgAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTc < 8:187203/149‑1 (MQ=255) gACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCAc > 8:217172/1‑129 (MQ=255) gACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCAc < 7:217172/129‑1 (MQ=255) cATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGtt < 1:190115/113‑1 (MQ=255) cATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGtt > 2:190115/1‑113 (MQ=255) gATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTtctc > 4:350653/1‑149 (MQ=255) gCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGc < 6:178852/148‑1 (MQ=255) aTCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCaaa < 4:156359/120‑1 (MQ=255) gACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGAc > 5:17759/1‑149 (MQ=255) aCCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGAcc > 5:146285/1‑149 (MQ=255) cgcgTGATTCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTTTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAg < 5:149597/149‑1 (MQ=255) cGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAGCACCTGGAg > 1:28020/1‑148 (MQ=255) gttgAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGc < 2:241502/118‑1 (MQ=255) gttgAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGc > 1:241502/1‑118 (MQ=255) tgAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTtctc < 5:72551/109‑1 (MQ=255) tgAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTtctc > 6:72551/1‑109 (MQ=255) gAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAGCACCTGGAGTATTactact > 3:46747/1‑149 (MQ=255) aCATCCAGATGCGCCCCGAGCGGCGCAACTCCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGTCCTGCAAGACCGAGTTCAAGCACCTGGAGTATTACTACtt < 8:341643/148‑1 (MQ=255) ccGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAGCACCTGGAGTATTACTACTTCCACAATTGCGTTTAt > 1:50636/1‑149 (MQ=255) | GCTTGGCACCCGCAACATCAAGCTGGCCCTGCGCCGGCTACGCAAGTTCGCCCGCGAA‑GGCGCCGCCGAAGAGCTCGACATCGATGGCACCATCGACCACACCGCGCGTGATGCCGGGTTGTTGAACATCCAGATGCGCCCCGAGCGGCGCAACACCGTGAAGCTGCTGTTGCTGTTCGACATTGGCGGTTCGATGGACGCCCACGTCAAAGTCTGCGAAGAGCTGTTCTCGGCCTGCAAGACCGAGTTCAAGCACCTGGAGTATTACTACTTCCACAATTGCGTTTAT > NC_002947/5194216‑5194504 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |