Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,493,217 | G→A | 10.1% | R267C (CGC→TGC) | cobJ ← | precorrin‑3B C17‑methyltransferase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,493,217 | 0 | G | A | 10.1% | 157.6 / 6.0 | 59 | R267C (CGC→TGC) | cobJ | precorrin‑3B C17‑methyltransferase |
Reads supporting (aligned to +/- strand): ref base G (26/27); new base A (3/3); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.63e-01 |
CGCGACGGCGGCCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACTGTGCAGATTGCCACCTG > NC_002947/5493079‑5493360 | cgcgACGGCGGCCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGTGCAAAGGGaca > 7:211031/1‑149 (MQ=255) cgACGGCGGCCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCCACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACAcc > 4:123693/1‑149 (MQ=255) cgACGGCGGCCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACAcc > 5:30060/1‑149 (MQ=255) gACGGCGGCCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAgg > 8:67660/1‑142 (MQ=255) gACGGCGGCCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAgg < 7:67660/142‑1 (MQ=255) ggcCGACCTGCGCTACGTCGACCGGGGCAGCCGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGcc > 3:37874/1‑149 (MQ=255) ggcCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGcc > 7:252301/1‑149 (MQ=255) aCCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTgcgc < 1:114577/149‑1 (MQ=255) aCCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTgcgc < 1:110290/149‑1 (MQ=255) cTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAg < 6:271837/149‑1 (MQ=255) gcTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTc < 3:123693/149‑1 (MQ=255) cGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAAc > 7:207778/1‑149 (MQ=255) aCCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAAc > 2:61383/1‑147 (MQ=255) aCCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAAc < 1:61383/147‑1 (MQ=255) cGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCACAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACgcgc > 5:177531/1‑149 (MQ=255) cGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCACAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACgcgc > 3:146249/1‑149 (MQ=255) cGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCACAAAGGGACACCCAGGGCCTGCGCAGCTGCGTGCAACgcgc > 3:151593/1‑149 (MQ=255) gCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTc < 5:240618/149‑1 (MQ=255) cGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCa < 3:201907/149‑1 (MQ=255) ccACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCg > 5:43412/1‑149 (MQ=255) cACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTc > 3:249345/1‑147 (MQ=255) cACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTc < 4:249345/147‑1 (MQ=255) cACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGt > 4:17456/1‑149 (MQ=255) cAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCAct > 4:246317/1‑148 (MQ=255) cAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACg > 1:92637/1‑149 (MQ=255) aaGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACg > 1:228790/1‑148 (MQ=255) gcgcTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAGAGTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCg < 1:249698/105‑1 (MQ=255) gcgcTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCg > 2:249698/1‑104 (MQ=255) gcgcTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCCCGCAg > 7:263018/1‑149 (MQ=255) tATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCATGCAGGCTa > 6:234670/1‑149 (MQ=255) aaCTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTAcc > 8:27010/1‑147 (MQ=255) aCTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAg > 6:139707/1‑149 (MQ=255) aTCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAggg < 7:236548/64‑1 (MQ=255) aTCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAggg > 8:236548/1‑64 (MQ=255) tCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCATGCAGGCTACCGAGGGCTCgg < 5:234670/148‑1 (MQ=255) gggCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGa > 1:325508/1‑149 (MQ=255) cgccgcAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCgg < 5:37610/149‑1 (MQ=255) gccgcAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGc < 6:259883/149‑1 (MQ=255) gccgcAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGc > 8:17072/1‑149 (MQ=255) gccgcAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCACAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGc < 6:177531/149‑1 (MQ=255) gccgcAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCACAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGc < 4:151593/149‑1 (MQ=255) gccgcAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCACAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGc < 4:146249/149‑1 (MQ=255) cgcAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCct < 2:92637/149‑1 (MQ=255) gCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCctgctg < 8:207778/149‑1 (MQ=255) gACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCa < 7:17072/149‑1 (MQ=255) aCCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAg < 1:33591/149‑1 (MQ=255) cATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGtg > 7:45890/1‑149 (MQ=255) gCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGc > 1:313571/1‑99 (MQ=255) gCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTCTCGGCCATGGTTCGCTCGTCTGc < 2:313571/99‑1 (MQ=255) cTGGCCACATCGCCGGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGtgctg < 7:27010/148‑1 (MQ=255) gCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTgcgc < 6:30060/148‑1 (MQ=255) gCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACtg < 4:37874/148‑1 (MQ=255) gCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACtg < 8:252301/148‑1 (MQ=255) cAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACTGTGCAGAtt < 2:228790/149‑1 (MQ=255) gTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACTGTGCAGATTGcc < 3:17456/149‑1 (MQ=255) gTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACTGTGCAGATTGc > 2:47280/1‑148 (MQ=255) gCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACTGTGCAGATTGCCAcc < 8:45890/149‑1 (MQ=255) cGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACTGTGCAGATTGCCACCt < 6:43412/149‑1 (MQ=255) gAAGCGCAAAGGGACACCCACGCCCTGCGAAGCTTCGTCCAACGCCCTGTCGGCCAAGGTTCGCTCGTCTGCCAGCACGCACGCTACCGAGGGCTCCCCCAACACCGCCTCCTGCAGAGCTGCACCAATACACTCCAGAATGCCACCTg > 4:156569/1‑149 (MQ=255) | CGCGACGGCGGCCGACCTGCGCTACGTCGACCGGGGCAGACGCCACCGCGACCACGACTTCTCCAAGCGCTATCAACTCGCTATCGGGCACCGCCGCAGCGACCATGCTGGCCACATCGCCTGGGCAG‑GTGGCGAAGCGCAAAGGGACACCCAGGGCCTGCGCAGCTTCGTGCAACGCGCTGTCGGCCATGGTTCGCTCGTCTGCCAGCACGCAGGCTACCGAGGGCTCGGCGATGCCGGCCTGCTGCAGTGCTGCGCGAATACTGTGCAGATTGCCACCTG > NC_002947/5493079‑5493360 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |