Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,628,610 | A→T | 7.7% | intergenic (‑80/+27) | rlmJ ← / ← putP | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase/sodium/L‑proline transporter |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,628,610 | 0 | A | T | 7.7% | 152.9 / 3.5 | 52 | intergenic (‑80/+27) | rlmJ/putP | 23S rRNA (adenine(2030)‑N(6))‑methyltransferase/sodium/L‑proline transporter |
Reads supporting (aligned to +/- strand): ref base A (24/24); new base T (2/2); total (26/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.91e-01 |
AGCACGATGTGTTTGAGGACGTCGGCGTGGTTGCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGGATGA > NC_002947/5628469‑5628758 | aGCACGATGTGTTTGAGGACGTCGGCGTGGTTGCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGgc < 3:184681/149‑1 (MQ=255) cGATGTGTTTGAGGACGTCGGCGTGGTTGCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGcgccg < 5:110775/149‑1 (MQ=255) gtTTGAGGACGTCGGCGTGGTTGCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAAt > 8:209726/1‑148 (MQ=255) gtTTGAGGACGTCGGCGTGGTTGCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAAt > 2:320888/1‑148 (MQ=255) gAGGACGTCGGCGTGGTTGCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCaa < 6:63811/148‑1 (MQ=255) gCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCg > 4:29011/1‑149 (MQ=255) ccGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCg < 5:41227/148‑1 (MQ=255) ccGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGt < 3:29011/149‑1 (MQ=255) ggCGTGGAAGGCGTGACGATAGTTCATGGCAACTTCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGt > 1:43960/1‑148 (MQ=255) gTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAAtc < 4:167924/121‑2 (MQ=38) gTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAAtc < 4:173294/121‑2 (MQ=38) gTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAAtc > 3:173294/1‑120 (MQ=38) gTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCGCCTGCTTTGCGGGTGCCGCCAAtc > 3:167924/1‑120 (MQ=38) tGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATAcg > 1:6195/1‑149 (MQ=255) gAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATAcgc < 3:111854/148‑1 (MQ=255) cGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATc < 7:209726/149‑1 (MQ=255) gTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCAt > 4:285320/1‑147 (MQ=255) aCGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGc < 2:43960/148‑1 (MQ=255) aCGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGc < 1:249552/148‑1 (MQ=255) gATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGc > 5:280772/1‑149 (MQ=255) gTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTc > 1:77463/1‑148 (MQ=255) ttCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCg > 8:194472/1‑148 (MQ=255) aTGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAgc > 8:39340/1‑149 (MQ=255) cAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCtt < 1:320888/149‑1 (MQ=255) aaC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCtt > 8:241783/1‑148 (MQ=255) aaC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCtt > 5:314871/1‑148 (MQ=255) aC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGa < 3:285320/149‑1 (MQ=255) tCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGAc > 7:170898/1‑148 (MQ=255) cggcAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGc > 8:217591/1‑147 (MQ=255) cggcAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCg > 1:208543/1‑148 (MQ=255) ggcAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGaa < 3:114806/149‑1 (MQ=255) gcAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAg > 1:43455/1‑149 (MQ=255) cAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAgg < 7:39340/149‑1 (MQ=255) gTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTTATTGGCGGCACCCGCAAAGCTGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATAcgc < 5:12770/104‑1 (MQ=255) gTTTACCTTGCATTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATAcgc > 6:12770/1‑104 (MQ=255) tttACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAgg > 1:100269/1‑62 (MQ=255) tttACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAgg < 2:100269/62‑1 (MQ=255) gccttgcAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCt < 7:241783/148‑1 (MQ=255) ttgcAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATAcgc > 3:137528/1‑92 (MQ=255) ttgcAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATAcgc < 4:137528/92‑1 (MQ=255) aGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGa > 6:324874/1‑114 (MQ=255) aGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGa < 5:324874/114‑1 (MQ=255) ggCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCa < 6:314871/149‑1 (MQ=255) ggCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCa < 2:43455/149‑1 (MQ=255) ggAGTCAGGGCTGGCTGCTGATTGGCGGCAACCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGaa < 8:284649/149‑1 (MQ=255) ctgATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGc < 8:170898/148‑1 (MQ=255) gATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGaa < 5:80106/130‑1 (MQ=255) gATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGaa > 6:80106/1‑130 (MQ=255) ttGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACa < 2:6195/149‑1 (MQ=255) ggcACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAg > 7:236991/1‑149 (MQ=255) cGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCgg > 5:109996/1‑148 (MQ=255) gCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCAAACAGGAAGCCCGGga > 5:176533/1‑149 (MQ=255) aaGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGgatga < 2:208543/149‑1 (MQ=255) | AGCACGATGTGTTTGAGGACGTCGGCGTGGTTGCCGGCGTGGAAGGCGTGACGATAGTTCATGGCAAC‑TCCTGCGAAGGCGGCAAGTTTACCTTGCCTTGCAGGCGGAGTCAGGCCTGGCTGCTGATTGGCGGCACCCGCAAAGCAGGCGCCGCCAATTCAACGGGTGTTACTTGTCGGCGTGATACGCCGCATCAGCCGCTTCGAAGCGCTTGACCATCGTCTGCGAAGGGCTGCCCAGCTTGCTCACCAGAACAATGGCGATGCTGGCGAACAGGAAGCCCGGGATGA > NC_002947/5628469‑5628758 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |