Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,749,603 | A→G | 6.9% | V126A (GTG→GCG) | typA ← | ribosome associated GTPase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,749,603 | 0 | A | G | 6.9% | 166.6 / 2.0 | 58 | V126A (GTG→GCG) | typA | ribosome associated GTPase |
Reads supporting (aligned to +/- strand): ref base A (29/25); new base G (2/2); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 |
CGGCAATGCCGTTCAGGGCCGAGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACATTACACGCTCAACCTCGCCACCGAAGTCGGCGTGG > NC_002947/5749463‑5749749 | cGGCAATGCCGTTCAGGGCCGAGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGAtt > 2:60845/1‑149 (MQ=255) cGGCAATGCCGTTCAGGGCCGAGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGAtt > 8:216841/1‑149 (MQ=255) aTGCCGTTCAGGGCCGAGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCTAAGACAGGTCGAAGATCTCGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCGCGACGATTGGc > 1:292547/1‑149 (MQ=255) aTGCCGTTCAGGGCCGAGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCGCGACGATTGGCt > 3:215687/1‑148 (MQ=255) ccGAGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTc > 4:222051/1‑148 (MQ=255) ccGAGGCGTAGACCACTATGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTc > 4:332446/1‑148 (MQ=255) aGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGaaa < 3:222051/149‑1 (MQ=255) cGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGcc < 2:205361/149‑1 (MQ=255) ccACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTGGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCTACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTg < 8:45621/149‑1 (MQ=255) ccACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCGGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTg > 2:119128/1‑149 (MQ=255) ccACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTg < 8:39919/149‑1 (MQ=255) tCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCg > 8:180347/1‑149 (MQ=255) cTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGGCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGttt < 8:300103/149‑1 (MQ=255) gTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCATGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGc > 7:45226/1‑149 (MQ=255) ttCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTg < 7:180347/147‑1 (MQ=255) gtcgGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCACCCTTGTTGATCACGACGATTGGCTTCAGGCGGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCa > 5:309185/1‑149 (MQ=255) gtcgGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCa > 3:203585/1‑149 (MQ=255) tcgGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCAt > 2:274940/1‑149 (MQ=255) tGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCTAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCGCGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCAGCggc < 4:215687/149‑2 (MQ=255) tGGCACCGAGGTTGGCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCGCGACGATTGGCTTCGGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCAGCggc < 2:292547/149‑2 (MQ=255) cACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCg > 3:311520/1‑149 (MQ=255) aGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTg < 3:332446/149‑1 (MQ=255) ggTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCGGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTgg < 1:119128/149‑1 (MQ=255) gTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTggg > 2:330438/1‑149 (MQ=255) tCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGt < 7:216841/148‑1 (MQ=255) gA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTg > 2:345587/1‑106 (MQ=255) gA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTg < 1:345587/106‑1 (MQ=255) aCAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGaaa < 8:23295/95‑1 (MQ=255) aCAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGaaa > 7:23295/1‑95 (MQ=255) gTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGAtt < 2:266960/70‑1 (MQ=255) gTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGAtt > 1:266960/1‑70 (MQ=255) gTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGACCTGGGCGTCGACcag > 3:104858/1‑147 (MQ=255) tCGAAGATCTGGTCGAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACcagcag > 7:306304/1‑149 (MQ=255) tCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACcagcag > 8:121995/1‑149 (MQ=255) tCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACcagcag > 5:39872/1‑149 (MQ=255) cGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACcagcagc < 1:330438/149‑1 (MQ=255) gATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGTTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAgcagcagca > 3:248354/1‑149 (MQ=255) gTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGt < 1:60845/149‑1 (MQ=255) gTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGt > 1:183416/1‑149 (MQ=255) aGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGAc < 8:82338/149‑1 (MQ=255) gAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTCTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCCGGCCGTCCTGGTCGTCGACCAGCAGCAGCACGGAGTCGAc > 8:187285/1‑148 (MQ=255) ccAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACcagc < 8:322923/127‑1 (MQ=255) ccAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACcagc > 7:322923/1‑127 (MQ=255) aGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGa > 3:277849/1‑148 (MQ=255) gTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACa < 4:311520/149‑1 (MQ=255) tCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACAt < 8:306304/149‑1 (MQ=255) aGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACAtt < 4:277849/148‑1 (MQ=255) aCGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCATGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCAAGGAGTCGACCATCGACATTacac > 1:70515/1‑149 (MQ=255) gTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACATTACACGc < 4:104858/149‑1 (MQ=255) gcgcCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGt > 3:229679/1‑127 (MQ=255) gcgcCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGt < 4:229679/127‑1 (MQ=255) cgcCCGGACGGGCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCGTCGAAAGCCTTCTTGGGCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCATCAGCACGGAGTCGACCATCGACATTACACGCTc < 6:309185/148‑1 (MQ=255) acAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTGCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACAt < 8:147931/127‑1 (MQ=255) aaCCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACATTACACGCTCAACCTCGCCACCg > 1:170276/1‑148 (MQ=255) cTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGTGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCTGCACGGAGTCGACCATCGACATTACACGCTCAACGTCGCCACCGAAGt < 7:187285/149‑1 (MQ=255) gATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACATTac < 8:152643/120‑1 (MQ=255) tCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACATTACACGCTCAACCTCGCCACCGAAGTCGGCGTgg > 4:84720/1‑149 (MQ=255) tCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACATTACACGCTCAACCTCGCCACCGAAGTCGGCGTgg > 2:41634/1‑149 (MQ=255) | CGGCAATGCCGTTCAGGGCCGAGGCGTAGACCACTTTGAAGTCCAGCTGTTCGTCGGTGGCACCGAGGTTGTCGA‑‑ACAGGTCGAAGATCTGGTCCAGAACCCAGTCAGGACGTGCGCCCGGACGGTCAACCTTGTTGATCACGACGATTGGCTTCAGGCCGGCTTCGAAAGCCTTCTTGGTCACGAAGCGGGTTTGCGGCATCGGGCCGTCCTGGGCGTCGACCAGCAGCAGCACGGAGTCGACCATCGACATTACACGCTCAACCTCGCCACCGAAGTCGGCGTGG > NC_002947/5749463‑5749749 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |