| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 499,203 | 0 | A | G | 100.0% | 101.0 / NA | 31 | intergenic (+47/‑249) | uhpA/PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/16); total (15/16) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCC > NC_002947/499060‑499338 | gACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGGAAGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCa > 1:102699/1‑149 (MQ=255) aTCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCggggcatccc > 2:351678/1‑142 (MQ=255) ccACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACgg > 2:353930/1‑149 (MQ=255) acaAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGCGAGGCAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACg > 1:111507/1‑149 (MQ=255) aCGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGggcctggcct < 2:102699/149‑1 (MQ=255) gCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCctgc > 2:250328/1‑149 (MQ=255) ccTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCctgct < 1:353930/149‑1 (MQ=255) cTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGc > 6:254643/1‑122 (MQ=255) cTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGc < 5:254643/122‑1 (MQ=255) aTGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGAtc > 7:85528/1‑149 (MQ=255) cAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGggcctggc < 8:248430/137‑1 (MQ=255) cAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGggcctggc > 7:248430/1‑137 (MQ=255) aaGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATg < 2:281444/149‑1 (MQ=255) gTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGccc < 8:41559/117‑1 (MQ=255) gTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGccc > 7:41559/1‑117 (MQ=255) ttGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCt < 2:111507/149‑1 (MQ=255) ttGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCt > 4:255362/1‑149 (MQ=255) aaGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGa < 8:175878/147‑1 (MQ=255) aaGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGa > 7:175878/1‑147 (MQ=255) aaGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGc > 4:107077/1‑149 (MQ=255) ccTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCct < 6:240323/148‑1 (MQ=255) gCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCgg > 4:97302/1‑149 (MQ=255) aGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCAt < 8:85528/149‑1 (MQ=255) tGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGc < 3:107077/149‑1 (MQ=255) ccATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATTCCCCCGAACCGGCCAGGCCTGCTTAAATCTATGGCTGAGCCGGCCTCTTAGCCGGCATGCCCGCTCCcacaag > 6:264147/1‑147 (MQ=255) a‑‑caAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGt < 5:278902/149‑1 (MQ=255) aaGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTg < 1:250328/149‑1 (MQ=255) gaattACGGGTGCCCGAAACTTGCGGAAGCCTATGTGGGTGCGGGCAGGCCGGCGAAGGGGCCTGGCCTGCTCATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTc < 3:235534/145‑1 (MQ=38) gggTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATccc < 3:97302/149‑1 (MQ=255) cGAAACTTGCCGAAGCCTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATcc > 2:266309/1‑149 (MQ=255) cGAAGCCTATGTGGGAGCGGGCATGCCCCCGAACGGGCCTGGCCTGCGGATCTCTATGGCTGCGCCGGCCTCTTAGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCCATCCCGCCATCCTTGTAGGGc > 2:57134/1‑148 (MQ=255) ccTATGTGGGAGCGGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATccc < 1:266309/149‑1 (MQ=255) | GACCATCAGCACCCACAAGGCACGCCTGATGCAGAAGTTGAAAGTGAACTCGCTGGCGG‑AGCTGGTGAAGTACGCCATGGAGC‑A‑‑CAAGCTGATCTGATTGCGACATACGGGTGCCCGAAACTTGCCGAAGCCTATGTGGGAGCAGGCATGCCCGCGAACGGGCCTGGCCTGCTGATCTCTATGGCTGAGCCGGCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTTCGTGGTTGGCTCGCAAGGGCATTCCAATCCCGCCATCCTTGTAGGGCGATCCC > NC_002947/499060‑499338 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |