Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,839,099 G→A 7.5% A157T (GCC→ACC)  yheT → putative hydrolase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,839,0990GA 7.5% 149.2 / 2.1 53A157T (GCC→ACC) yheTputative hydrolase
Reads supporting (aligned to +/- strand):  ref base G (24/25);  new base A (2/2);  total (26/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.42e-01

CCGCGCAGCTACCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATGCGCGAGATGCTGGCGTATGTTCAGCTCAAGCAGCG  >  NC_002947/5838952‑5839241
                                                                                                                                                   |                                                                                                                                               
ccGCGCAGCTACCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCgc                                                                                                                                                >  2:82667/1‑149 (MQ=255)
 cgcgCAGCTACCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAACGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCgcc                                                                                                                                               <  8:70500/149‑1 (MQ=255)
  gcgcAGCTACCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCgc                                                                                                                                                >  1:202097/1‑147 (MQ=255)
        cTACCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAAc                                                                                                                                        >  1:351604/1‑149 (MQ=255)
          aCCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTg                                                                                                                                      >  6:157130/1‑149 (MQ=255)
          aCCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCACCAGCCAACTg                                                                                                                                      >  5:13785/1‑149 (MQ=255)
          aCCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCACCAGCCAACTg                                                                                                                                      >  5:18832/1‑149 (MQ=255)
            cATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGa                                                                                                                                    <  2:202097/149‑1 (MQ=255)
            aaTTCCTGCGCCAGCGAAGACCTGTCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGa                                                                                                                                    <  8:337466/148‑1 (MQ=255)
             aTTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTggtg                                                                                                                                   <  8:104790/149‑3 (MQ=255)
                 cGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTCTATGCAGTGGGTTATTCGCTGGGTGGCAATGTAATGTTGAAATAGCTGGGAGAGAGCGGCGTCGACATCCAACTGGAGGCAg                                                                                                                               >  8:326536/1‑149 (MQ=255)
                     gcCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGc                                                                                                                           >  8:1408/1‑149 (MQ=255)
                         gCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCa                                                                                                                       <  2:97202/149‑1 (MQ=255)
                                 cTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGt                                                                                                               <  1:82667/149‑1 (MQ=255)
                                    gCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTAGGTGcc                                                                                                            >  7:162321/1‑149 (MQ=255)
                                     cGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGccc                                                                                                           <  2:351604/149‑1 (MQ=255)
                                      ggAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGAGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAg                                                                                                                                   <  1:338585/124‑1 (MQ=255)
                                      ggAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGAGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAg                                                                                                                                   >  2:338585/1‑124 (MQ=255)
                                         aaTTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCACCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTc                                                                                                       <  6:13785/149‑1 (MQ=255)
                                         aaTTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCACCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTc                                                                                                       <  6:18832/149‑1 (MQ=255)
                                           ttGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCg                                                                                                                 >  7:287709/1‑137 (MQ=255)
                                           ttGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTAGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCg                                                                                                                 <  8:287709/137‑1 (MQ=255)
                                                aGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTgg                                                                                                 <  5:157130/148‑1 (MQ=255)
                                                   cATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCa                                                                                             >  4:170991/1‑149 (MQ=255)
                                                    aTCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCAc                                                                                            >  7:305104/1‑149 (MQ=255)
                                                         cgcgCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACt                                                                                           <  3:170991/145‑1 (MQ=255)
                                                            gcCCAGCGGCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGa                                                                                    <  5:60524/149‑1 (MQ=255)
                                                              ccAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGAcc                                                                                  <  2:304575/149‑1 (MQ=255)
                                                                           gcgcCGCTGTATGCAGTGGGTTTTTCGCTGGGTGGCAATGTACTGTTCAAATACCTGGGAGAGAGCGTCGTCGCCAGACAACTGTAGGCAGCGGCTGCAGTTTCGTTGCTCTTTCGACTGGATCACTGTGTCGACCGTATCGGCCAAg                                                                      <  8:54346/148‑1 (MQ=255)
                                                                           gcgcCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAgg                                                                     <  6:334426/149‑1 (MQ=255)
                                                                                           tGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTa                                                     >  6:276867/1‑148 (MQ=255)
                                                                                           tGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTAt                                                    >  4:237385/1‑149 (MQ=255)
                                                                                              gTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAg                                                 >  3:33376/1‑149 (MQ=255)
                                                                                                   tggCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCa                                            >  2:186855/3‑149 (MQ=255)
                                                                                                    cGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCa                                            <  5:218237/148‑1 (MQ=255)
                                                                                                     gCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCAtt                                          >  1:205610/1‑149 (MQ=255)
                                                                                                     gCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCAtt                                          >  2:265474/1‑149 (MQ=255)
                                                                                                       tGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCAatt                                         >  2:283937/1‑148 (MQ=255)
                                                                                                         ggTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCa                                       <  1:186855/148‑1 (MQ=255)
                                                                                                         ggTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCAt                                      >  5:221700/1‑149 (MQ=255)
                                                                                                         ggTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCAt                                      <  7:1408/149‑1 (MQ=255)
                                                                                                          gTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATg                                     <  1:81325/149‑1 (MQ=255)
                                                                                                           tGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATgc                                    <  3:237385/149‑1 (MQ=255)
                                                                                                               aaTGTACTGTTGAAATACCTGGGAGAGAGCCGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATgcgc                                  >  1:31902/1‑147 (MQ=255)
                                                                                                                   tACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATGCGCGAGATg                            <  4:33376/149‑1 (MQ=255)
                                                                                                                      tGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGgc                                               <  5:236168/127‑1 (MQ=255)
                                                                                                                      tGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGgc                                               >  6:236168/1‑127 (MQ=255)
                                                                                                                        ttGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGgt                                                        >  3:262567/1‑116 (MQ=255)
                                                                                                                        ttGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGgt                                                        <  4:262567/116‑1 (MQ=255)
                                                                                                                         tGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATGCGCGAGATGCTGGc                       <  8:162321/148‑1 (MQ=255)
                                                                                                                          gAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGgc                                               >  2:314018/1‑123 (MQ=255)
                                                                                                                          gAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGgc                                               <  1:314018/123‑1 (MQ=255)
                                                                                                                                      agagagCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATGCGCGAGATGCTGGCGTATGTTCAGCTc          >  7:129110/1‑148 (MQ=255)
                                                                                                                                       gagagCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGCTGTATCAGGCGCATTTCATGCGCGAGATGCTGGCGTATGTTCAGCTCa         <  1:265474/149‑1 (MQ=255)
                                                                                                                                            cggcgTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATGCGCGAGATGCTGGCGTATGTTCAGCTCAagcagc   >  3:142903/1‑149 (MQ=255)
                                                                                                                                             ggcgTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATGCGCGAGATGCTGGCGTATGTTCAGCTCAAGCAGCg  >  6:316297/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
CCGCGCAGCTACCATTCCGGCGCCAGCGAAGACCTGGCGGAAATTGTCAGCCATCTTCGCGCCCAGCGCCCGCTGGCGCCGCTGTATGCAGTGGGTTATTCGCTGGGTGGCAATGTACTGTTGAAATACCTGGGAGAGAGCGGCGTCGCCAGCCAACTGGAGGCAGCGGCTGCAGTTTCGGTGCCCTTTCGCCTGGACCACTGTGCCGACCGTATCGGCCAAGGGTTCTCCAAGGTGTATCAGGCGCATTTCATGCGCGAGATGCTGGCGTATGTTCAGCTCAAGCAGCG  >  NC_002947/5838952‑5839241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: