Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,119,567 | C→T | 7.0% | A396A (GCG→GCA) | PP_5370 ← | oxidoreductase‑like protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,119,567 | 0 | C | T | 7.0% | 162.1 / 3.0 | 57 | A396A (GCG→GCA) | PP_5370 | oxidoreductase‑like protein |
Reads supporting (aligned to +/- strand): ref base C (29/24); new base T (2/2); total (31/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01 |
TACTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCATAGACCCCACCCCAGGTATG > NC_002947/6119429‑6119713 | tACTTCGCTCCTACTGATGCACGCGGCCGAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGATACTGCAGGGCAGGCCAGTCACTGCGCGGATTACACACAAATGCAGGGAGTCCGCGCCACCCGCCATGTCTg > 7:332273/1‑149 (MQ=255) aCTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACTGCCATGTCTGc > 3:72722/1‑149 (MQ=255) aCTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACTGCCATGTCTGc > 3:67962/1‑149 (MQ=255) aCTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGc > 2:274754/1‑149 (MQ=255) ttCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCt < 7:207001/145‑1 (MQ=255) ttCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCt > 8:207001/1‑145 (MQ=255) gagccTTCTGTTGAACGCTGCGCAGCGGATCCGGGCCCGCACACCCATACCCAAGAACGGCTCAGGGGTGTTACGGGAGGGCAGGCGAGTCACTGCGTGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAgta < 8:332273/146‑3 (MQ=255) gCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGa < 5:5777/149‑1 (MQ=255) cTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGt > 8:238433/1‑149 (MQ=255) tACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCAt > 3:209815/1‑133 (MQ=255) tACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCAt < 4:209815/133‑1 (MQ=255) aaCGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGaaa < 1:274754/148‑1 (MQ=255) gcgGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGt > 2:289531/1‑149 (MQ=255) tCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCcgcg > 4:162371/1‑149 (MQ=255) tCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCcgcg > 4:156947/1‑149 (MQ=255) cGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATg > 6:204504/1‑132 (MQ=255) cGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATg < 5:204504/132‑1 (MQ=255) gggCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCCCCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGccc > 4:214965/1‑149 (MQ=255) ggCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCa > 5:333611/1‑149 (MQ=255) ccGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGc > 4:213809/1‑149 (MQ=255) cccccATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTg < 1:289531/149‑1 (MQ=255) aTACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCg > 2:311076/1‑147 (MQ=255) tACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAg < 3:213809/149‑1 (MQ=255) ccAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGCGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCg > 5:188405/1‑149 (MQ=255) cgaccGGCTCAGGCGGGTTACGGGAGCGCAGGCCAGTCACTGCGCGGATGTCACTCACTTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTg < 6:262583/145‑1 (MQ=255) aGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTg < 6:333611/149‑1 (MQ=255) aCGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGc < 4:229800/148‑1 (MQ=255) cAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAaca < 1:311076/149‑1 (MQ=255) ttACGTGAGGGCATGCCAGTCACAGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACTGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATc < 4:72722/149‑1 (MQ=255) ttACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACTGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATc < 4:67962/149‑1 (MQ=255) gggCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGc < 1:245267/149‑1 (MQ=255) gggCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGc < 7:238433/149‑1 (MQ=255) ggCCAGTCACTGCGCGGCTGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGACCGAGTTGGCCGaaa < 7:307005/149‑1 (MQ=255) gCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGAt > 2:72770/1‑134 (MQ=255) gCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGAt < 1:72770/134‑1 (MQ=255) gTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGtt > 8:228852/1‑149 (MQ=255) cACTCAATTGCTGGGAGTCCGCCCCGACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGGCCTCGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTgg < 1:218871/122‑1 (MQ=255) cACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCCCCCACGCCGTTGTCGCAGCCGGTGGCGTAAACACCCTGATCGAGTTgg > 2:218871/1‑122 (MQ=255) tCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCAGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGt > 5:307133/1‑143 (MQ=255) aaTTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCAGAAATAGTTGGTAAAGTTGCGTGAGATCg > 2:194823/1‑148 (MQ=255) aTTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCATGATCGAGTTGGCCGATATAGTTGGTAAAGTTGCGTGAGATCGCa < 6:188405/149‑1 (MQ=255) ttGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCAt > 3:233202/1‑149 (MQ=255) ttGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCAt < 7:228852/149‑1 (MQ=255) gCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCATa < 5:226968/148‑1 (MQ=255) ggAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACCCCCTGATCGAGTTGGCCGAAATAGTTGGTAAAg > 6:268296/1‑127 (MQ=255) ggAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAg < 5:268296/127‑1 (MQ=255) ggAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCg > 1:163726/1‑132 (MQ=255) ggAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCg < 2:163726/132‑1 (MQ=255) ggAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCATAGaccc > 4:325972/1‑149 (MQ=255) gAGTCCGCCCCCACCGCGATGTCTGCCAGGAGCGTTCCGGATATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTTCACACCCTGCTCGAGGTGGCCGAAATAGTTGGTAAGGTTGCGTGTGAGCGCATTGagccc > 4:306466/1‑149 (MQ=255) gAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGGCGAACTAGTTGGTAAAGTTGCGTGAGATCGCATAGacccc > 5:26311/1‑149 (MQ=255) gAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGAGCGCATAGacccc > 5:21180/1‑149 (MQ=255) cGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTgaga > 6:230773/1‑131 (MQ=255) cGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTgaga < 5:230773/131‑1 (MQ=255) ccACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCATAGACCCCACCCCAGGTa > 4:267903/1‑149 (MQ=255) cACCGCCATGTCAGCCACGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAACCACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCATAGACCCCACCCCAGGTAt < 6:217657/149‑1 (MQ=255) aCCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCATAGACCCCACCCCAGGTTTg > 3:34538/1‑149 (MQ=255) | TACTTCGCTCCTACTGTTGAACGCGGCCCAGCGGATCCGGGCCCGCACCCCCATACCCAAGAACGGCTCAGGCGGGTTACGGGAGGGCAGGCCAGTCACTGCGCGGATGTCACTCAATTGCTGGGAGTCCGCCCCCACCGCCATGTCTGCCAGGAGCGTTCCGGAAATGGTGCCCCAGGCCGCGCCCACGCCGTTGTCGCAGGCGGTGGCGTAAACACCCTGATCGAGTTGGCCGAAATAGTTGGTAAAGTTGCGTGAGATCGCATAGACCCCACCCCAGGTATG > NC_002947/6119429‑6119713 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |