Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 646,272 | T→A | 12.4% | intergenic (‑178/‑106) | PP_0556 ← / → acoR | acetoin catabolism protein/acetoin catabolism regulatory protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 646,272 | 0 | T | A | 12.4% | 118.9 / 7.0 | 47 | intergenic (‑178/‑106) | PP_0556/acoR | acetoin catabolism protein/acetoin catabolism regulatory protein |
Reads supporting (aligned to +/- strand): ref base T (22/19); new base A (3/3); total (25/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGGGTGCCAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGACTGCGT > NC_002947/646135‑646415 | ggggTGCCAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAagc < 3:203326/149‑1 (MQ=255) ccAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCg > 1:338932/1‑149 (MQ=255) ccAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCg > 6:86411/1‑149 (MQ=255) ccAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCAGCGTCTCagt > 4:235559/1‑140 (MQ=255) ccAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCAGCGTCTCagt < 3:235559/142‑3 (MQ=255) cAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCgg > 7:36899/1‑149 (MQ=255) cAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCgg > 3:228967/1‑149 (MQ=255) gCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGt > 8:231253/1‑148 (MQ=255) cTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTaa < 5:298893/149‑1 (MQ=255) tttCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAAt > 7:79501/1‑149 (MQ=255) gcgATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATcacaca < 5:86411/148‑1 (MQ=255) gcgATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAg > 6:130196/1‑149 (MQ=255) gCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCAt < 7:231253/149‑1 (MQ=255) ggCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCag > 3:240744/1‑143 (MQ=255) ggCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCag < 4:240744/143‑1 (MQ=255) ctctGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCt > 3:208970/1‑148 (MQ=255) ggTCGTGTTCGGGCAGGTTTTCACCGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGCTAATCACACAGTGCTTCTCGGGGCATGCCCAGAGGCGCTTAATg > 6:325361/1‑149 (MQ=255) gtgtTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCg > 5:137796/1‑149 (MQ=255) ttCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGcc < 1:290570/145‑1 (MQ=255) ttCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGcc > 2:290570/1‑145 (MQ=255) ttCGGGCAGGTTTTCACGGGTAGGATGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCAGCGTCTCa < 4:83955/88‑1 (MQ=255) ttCGGGCAGGTTTTCACGGGTAGGATGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCAGCGTCTCa > 3:83955/1‑88 (MQ=255) gggCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCag > 1:211652/1‑127 (MQ=255) gggCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCag < 2:211652/127‑1 (MQ=255) ggCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACg < 6:137796/149‑1 (MQ=255) cAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGAt < 4:228967/149‑1 (MQ=255) ggCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCGTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCg > 7:275285/1‑149 (MQ=255) cGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGa < 8:79501/149‑1 (MQ=255) agaCGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAgg < 2:338932/149‑1 (MQ=255) aCGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGc > 5:170236/1‑149 (MQ=255) aGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAAt > 6:131312/1‑97 (MQ=255) aGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAAt < 5:131312/97‑1 (MQ=255) gcCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCcgc < 4:208970/149‑1 (MQ=255) gggCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATg > 6:38126/1‑92 (MQ=255) gggCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATg < 5:38126/92‑1 (MQ=255) ggCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAAc > 7:239821/1‑149 (MQ=255) cGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCAt > 3:220364/1‑149 (MQ=255) gaCACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCAtgtg < 5:130196/149‑1 (MQ=255) cacTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGa < 6:170236/149‑1 (MQ=255) cttGAGACGCAGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGAc > 3:26805/3‑149 (MQ=255) acTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGTGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGATCCCATGTGGAc > 3:209184/1‑149 (MQ=255) acTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGAc > 7:63725/1‑149 (MQ=255) agaCGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGACTGc < 4:220364/148‑1 (MQ=255) agaCGCAGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGACTGc < 4:26805/148‑1 (MQ=255) gaCGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGACTGCGt < 8:302105/149‑1 (MQ=255) gCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGaa < 6:285694/122‑1 (MQ=255) gCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGaa > 5:285694/1‑122 (MQ=255) | GGGGTGCCAGCTTTCTTCGCGATGGCTGAAGTGGCCGGGCTAGAGGGCTCTGGTCGTGTTCGGGCAGGTTTTCACGGGTAGGGTGGCGAGACGCCGGGTGCCAGCGCCGGGCCTGCGTTGCCGAGACACTGAGACGCTGCGTCTCAAGCCAGCCGGTAATCACACAGTGCTTGTCGGGGCATGCCCAGAGGCGCTTAATGGCCGGACAACGATAAAAACAGTAACGAGAACCGGAGGGCCTGAATGCTTGCCGCGAACTCCCGAGCCCATGTGGACTGCGT > NC_002947/646135‑646415 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |