| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 772,178 | T→C | 6.2% | intergenic (+39/‑160) | PP_0663 → / → PP_0664 | AsnC family transcriptional regulator/homoserine dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 772,178 | 0 | T | C | 6.2% | 224.7 / 4.2 | 82 | intergenic (+39/‑160) | PP_0663/PP_0664 | AsnC family transcriptional regulator/homoserine dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (41/35); new base C (2/3); total (43/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.23e-01 | |||||||||||
GTCGAGGCCTCCAGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCACTGCC > NC_002947/772032‑772319 | gTCGAGGCCTCCAGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCAGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑c < 8:124099/149‑1 (MQ=255) gAGGCCTCCAGCCCGGAGCGTGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑cgc < 4:111574/148‑1 (MQ=255) aGGCCTCCAGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑Cgcgc > 7:21306/1‑149 (MQ=255) aGGCCTCCAGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAAACGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGGATTGGCTAGCACA‑ACGCCGCCTGGGTT‑Cgcgc > 2:38991/1‑149 (MQ=255) cTCCAGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAg > 4:321297/1‑149 (MQ=255) tCCAGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAgg > 6:226416/1‑149 (MQ=255) aGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGCG‑CGAACCCAggc‑gg < 2:270490/149‑1 (MQ=255) aGCCCGGAGCGGGTGCACCATGTGTGGAAGCAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAggc‑gg < 8:90371/149‑1 (MQ=255) cccGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGgc‑ggcg > 2:65189/1‑149 (MQ=255) ggAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTtg > 4:38066/1‑149 (MQ=255) gAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGtt < 5:258203/147‑1 (MQ=255) gAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGtt > 6:258203/1‑147 (MQ=255) ggTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGtt < 8:21306/149‑1 (MQ=255) tGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGtttt < 3:24304/149‑1 (MQ=255) aCCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGcc > 4:41778/1‑149 (MQ=255) aCCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGcc > 6:164771/1‑149 (MQ=255) cATGTGTGGAAGGAAATCGCTGCCATGCCCGGGCTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCt > 8:46992/1‑149 (MQ=255) tgGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGgcgc < 7:46992/148‑1 (MQ=255) ggaaggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAg < 4:352036/149‑1 (MQ=255) ggaggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGCCTTAGTTAGTCGTGGCCGCGGTGGTGTGAGCCGCGGGTTTGCAGTGGGTATCACA‑ACGCCGGCAGGGTT‑CGCGCGCAGGG‑GGCGTTGTGCGGTTTGGCCTGGCGCAgg > 8:232383/3‑149 (MQ=255) gaaggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTTCCGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAg < 1:65189/149‑1 (MQ=255) gaaggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGcc > 1:333189/1‑139 (MQ=255) gaaggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGcc < 2:333189/139‑1 (MQ=255) gaaggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑AGCGCCCAGGC‑GGCGTTGTGCTTTTTGCCCTGGCGCAgg > 4:266435/1‑149 (MQ=255) aaggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGACTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGt > 4:248741/1‑149 (MQ=255) ggaaATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTgc > 3:192192/1‑149 (MQ=255) cTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTg < 5:164771/149‑1 (MQ=255) aTGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCttt > 1:190683/1‑143 (MQ=255) aTGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCttt < 2:190683/143‑1 (MQ=255) cccGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGcc < 3:321297/149‑1 (MQ=255) ccGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTgcgcg < 7:22102/135‑1 (MQ=255) ccGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTgcgcg > 8:22102/1‑135 (MQ=255) ccGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCa < 7:87088/149‑1 (MQ=255) gTGGAGAACACGGTGACTTCGTTCGTCTTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTg < 7:232383/149‑1 (MQ=255) tGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGGATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTgg < 1:38991/149‑1 (MQ=255) gagaACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGc > 1:336049/1‑148 (MQ=255) aaCACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCaa > 7:25215/1‑148 (MQ=255) acacGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCaata < 8:25215/149‑1 (MQ=255) acGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGTCaataaa > 2:332698/1‑149 (MQ=255) gACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAg > 6:214474/1‑149 (MQ=255) gACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAg < 3:248741/149‑1 (MQ=255) ttcgttcgTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCg > 3:110429/1‑148 (MQ=255) gttcgtCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGc > 8:88495/1‑122 (MQ=255) gttcgtCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGc < 7:88495/122‑1 (MQ=255) gttcgtCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATAc < 1:121434/141‑1 (MQ=255) gttcgtCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATAc > 2:121434/1‑141 (MQ=255) gCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATAtt < 3:38066/147‑1 (MQ=255) gcgGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACt > 5:18795/1‑149 (MQ=255) tCTGAACCGCATCTTTTCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCaataaat < 7:264278/119‑1 (MQ=255) tCTGAACCGCATCTTTTCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCaataaat > 8:264278/1‑119 (MQ=255) cTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGc > 6:200721/1‑149 (MQ=255) aaCCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTg < 7:147658/145‑1 (MQ=255) aaCCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTg > 8:147658/1‑145 (MQ=255) aCCGCGTCTTTGCATTGGCTAGCACAGACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCAATGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACg > 1:187150/1‑149 (MQ=255) ccGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGAT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGc < 6:18795/149‑1 (MQ=255) gTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGCGGGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGctct > 1:79946/1‑149 (MQ=255) cATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGc > 1:129389/1‑94 (MQ=255) cATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGc < 2:129389/94‑1 (MQ=255) cATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTa < 3:41778/148‑1 (MQ=255) cATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTa < 4:110429/148‑1 (MQ=255) aTTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTgg < 2:161671/126‑1 (MQ=255) aTTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTgg > 1:161671/1‑126 (MQ=255) ttGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTc < 5:226416/149‑1 (MQ=255) tGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGAt < 5:308065/87‑1 (MQ=255) tGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGAt > 6:308065/1‑87 (MQ=255) cTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCa < 4:192192/149‑1 (MQ=255) gCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCGAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATc < 2:336049/148‑1 (MQ=255) gCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATc > 6:341554/1‑148 (MQ=255) aca‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGAc < 2:79946/149‑1 (MQ=255) ca‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGAcc < 5:200721/149‑1 (MQ=255) aCGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCa > 1:74636/1‑149 (MQ=255) aCGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTAGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCa > 1:79776/1‑149 (MQ=255) cgccgcCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAg > 6:177254/1‑134 (MQ=255) cgccgcCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAg < 5:177254/134‑1 (MQ=255) cgccgcCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCAc > 3:163095/1‑149 (MQ=255) cgccgcCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCAc > 8:15355/1‑149 (MQ=255) gccgccTGGGCG‑CGAACCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGcc < 3:6256/99‑1 (MQ=38) gccgccTGGGCG‑CGAACCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGcc > 4:6256/1‑99 (MQ=38) ccgccTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCACTg > 2:319954/1‑149 (MQ=255) gccTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCACTGcc > 3:327596/1‑149 (MQ=255) gccTGGGCG‑CGAACCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGc < 5:6/127‑1 (MQ=255) gccTGGGCG‑CGAACCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGc > 6:6/1‑127 (MQ=255) | GTCGAGGCCTCCAGCCCGGAGCGGGTGCACCATGTGTGGAAGGAAATCGCTGCCATGCCCGGGGTGGAGAACACGGTGACTTCGTTCGTCCTGGCCGCGGTGGTCTGAACCGCGTCTTTGCATTGGCTAGCACA‑ACGCCGCCTGGGTT‑CGCGCCCAGGC‑GGCGTTGTGCGTTTTGCCCTGGCGCAGGTGCGCGCTTTGCACTGGCCAGATTGGCCAATAAATACAGCGGATTGCCATATTCAACTGGCAGTGCACGGCTCTTACGCTAGTCCTCATCGACCCACTGCC > NC_002947/772032‑772319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |