Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 895,207 G→C 8.2% intergenic (+47/+17) PP_0777 → / ← PP_0778 glutathione peroxidase/group 1 family glycosyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947895,2070GC 8.2% 137.9 / 2.2 46intergenic (+47/+17)PP_0777/PP_0778glutathione peroxidase/group 1 family glycosyl transferase
Reads supporting (aligned to +/- strand):  ref base G (18/24);  new base C (2/2);  total (20/26)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01

TTTCTGGTGGGCAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGCCCTGGCGGCTGGCATGC  >  NC_002947/895059‑895344
                                                                                                                                                     |                                                                                                                                         
tttCTGGTGGGCAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCcgcg                                                                                                                                           >  8:54804/1‑149 (MQ=255)
    tggtggGCAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCgcgg                                                                                                                                        >  5:337039/1‑148 (MQ=255)
      gtggGCAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCgcgg                                                                                                                                        <  4:163587/146‑1 (MQ=255)
      gtggGCAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCgcgg                                                                                                                                        <  6:337039/146‑1 (MQ=255)
        gggCAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGggcggc                                                                                                                                   >  4:40090/1‑149 (MQ=255)
           cAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCt                                                                                                                                <  5:171041/149‑1 (MQ=255)
           cAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCt                                                                                                                                <  3:175893/149‑1 (MQ=255)
           cAAGGATGGCCGGGTGCGGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCt                                                                                                                                <  3:235173/149‑1 (MQ=255)
            aaGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTg                                                                                                                               >  1:69051/1‑149 (MQ=255)
             aGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGGGGTGCAGGCCATCGAGAAAGCCCGGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTgg                                                                                                                              <  2:58613/149‑1 (MQ=255)
                aTGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCCAGCGCCGCCCGCGCGGCACTCGAtc                                                                                                                           <  3:167631/149‑1 (MQ=39)
                aTGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGCATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGAtc                                                                                                                           <  3:243808/149‑1 (MQ=255)
                 tGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGAtct                                                                                                                          <  5:76153/149‑1 (MQ=255)
                   gCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTca                                                                                                                        <  6:196202/149‑1 (MQ=255)
                            aggCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTg                                                                                                               >  6:358876/2‑149 (MQ=255)
                             ggCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGc                                                                                                              <  1:38094/149‑1 (MQ=255)
                             ggCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCCAGCGCCGCCCGCGCGGCACTCGATCTCACAGgtgcca                                                                                                               >  2:244194/1‑146 (MQ=37)
                              gcgcGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTg                                                                                                               <  2:69051/147‑1 (MQ=255)
                               cgcgTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCCCTGGATCTCACAGGCGCTGCaa                                                                                                            <  7:54804/149‑1 (MQ=255)
                                        cgccgcGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTgcg                                                                                                    >  6:263301/1‑148 (MQ=255)
                                         gccgcGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTTGCAGCACCTGTGAGATCCAGCGCCGCCCGCGCGGCACTCGAtc                                                                                                                           <  6:123684/125‑1 (MQ=25)
                                         gccgcGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTTGCAGCACCTGTGAGATCCAGCGCCGCCCGCGCGGCACTCGAtc                                                                                                                           >  5:123684/1‑125 (MQ=25)
                                                  ggCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCa                                                                                         <  5:114933/149‑1 (MQ=255)
                                                         gATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAg                                                                                  >  2:127252/1‑149 (MQ=255)
                                                               cctgCGGTGGTGCAGGCCATCGATAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCGGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAg                                                                            <  8:72952/146‑1 (MQ=255)
                                                               ccAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAg                                                                            >  8:93506/1‑149 (MQ=255)
                                                                    ggtggtGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGc                                                                       <  1:235716/149‑1 (MQ=255)
                                                                       ggtgCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCgg                                                                    >  7:208100/1‑149 (MQ=255)
                                                                              gCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATgcgc                                                             >  7:256323/1‑149 (MQ=255)
                                                                                cATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTg                                                           >  3:19647/1‑149 (MQ=255)
                                                                                 aTCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGt                                                          >  1:217695/1‑149 (MQ=255)
                                                                                 aTCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGt                                                          <  3:23/149‑1 (MQ=255)
                                                                                  tCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGtt                                                         <  8:208100/149‑1 (MQ=255)
                                                                                    gagaAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTc                                                        <  5:358876/148‑1 (MQ=255)
                                                                                         aGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATAc                                                  <  7:93506/149‑1 (MQ=255)
                                                                                          gCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATAcc                                                 >  3:106479/1‑149 (MQ=255)
                                                                                           cccTTGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCCGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATAccc                                                <  1:234357/149‑1 (MQ=255)
                                                                                           cccTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATAccc                                                <  4:19647/149‑1 (MQ=255)
                                                                                              tGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTc                                             >  6:261021/1‑149 (MQ=255)
                                                                                                   tGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACt                                        >  8:139044/1‑149 (MQ=255)
                                                                                                     aaGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGc                                                                                                              <  4:109818/77‑1 (MQ=255)
                                                                                                     aaGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGc                                                                                                              >  3:109818/1‑77 (MQ=255)
                                                                                                         gTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCgt                                  <  2:217695/149‑2 (MQ=255)
                                                                                                         gTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGa                                  <  1:127252/149‑1 (MQ=255)
                                                                                                                        ttt‑tGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGc                   >  4:349227/1‑149 (MQ=255)
                                                                                                                              gCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGCCCTgg              <  8:256323/149‑1 (MQ=255)
                                                                                                                                  cTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTTCAAACATTGCGCAGAACGCCCAGACGTAGCACCAg                                                                            >  7:224570/1‑83 (MQ=255)
                                                                                                                                  cTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGCCCTggcggc          >  1:25709/1‑149 (MQ=255)
                                                                                                                                  cTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGCCCTggcggc          <  5:263301/149‑1 (MQ=255)
                                                                                                                                   tgtgAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGCCCTGGCGGCt         >  4:39128/1‑149 (MQ=255)
                                                                                                                                          tccagcgccgccCGCGCGGCACTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGCCCTGGCGGCTGGCATGc  >  6:117581/7‑149 (MQ=39)
                                                                                                                                                     |                                                                                                                                         
TTTCTGGTGGGCAAGGATGGCCGGGTGCTGGCGCGTTTCTCGCCGCGCACGGCGCCGGATGACCCAGCGGTGGTGCAGGCCATCGAGAAAGCCCTGGCCTGAAGAGTGCCTGACGTGATGTTT‑TGGCACCTGTGAGATCGAGTGCCGCGCGGGCGGCGCTGGATCTCACAGGCGCTGCAAACATTGCGCAGAACGCCCAGCCGTAGCACCAGGTTGCCGGCATGCGCTGTTCAGATACCCCTCGAACTGTTCGACAATCGCCGGCCAGCCCTGGCGGCTGGCATGC  >  NC_002947/895059‑895344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑