Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 103,819 | T→A | 12.8% | intergenic (+117/‑23) | PP_0098 → / → PP_0099 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 103,819 | 0 | T | A | 12.8% | 120.6 / 8.8 | 47 | intergenic (+117/‑23) | PP_0098/PP_0099 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (24/17); new base A (4/2); total (28/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 |
TGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAC > NC_002947/103684‑103966 | tGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACCGTATATTAATACAGTAtt > 2:212821/1‑148 (MQ=255) ccTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGAt > 4:241711/1‑149 (MQ=255) cTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtcg < 8:95220/134‑3 (MQ=255) cTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATTAATATACAGTAtcg > 7:95220/1‑132 (MQ=255) ggATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGCTCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAg > 6:299956/1‑149 (MQ=255) gATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGACGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAgg < 8:131967/149‑1 (MQ=255) aTGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAggg < 3:138177/149‑1 (MQ=255) gcggcAATCGACCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGt > 4:179088/1‑149 (MQ=255) ggcAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTgg > 4:308487/1‑149 (MQ=255) aaTCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCAc > 7:201463/1‑149 (MQ=255) gAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGgcg > 7:25993/1‑149 (MQ=255) ccAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGca > 8:42833/1‑148 (MQ=255) aGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGAGCACaa > 2:222404/1‑149 (MQ=255) ggCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAAt < 3:179088/149‑1 (MQ=255) cAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATcc < 3:241711/149‑1 (MQ=255) tgtgCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACCGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAAc < 1:212821/149‑1 (MQ=255) gtgCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAAcc > 6:90614/1‑149 (MQ=255) gcgcTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGc > 7:99526/1‑149 (MQ=255) cTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCttt > 2:338596/1‑149 (MQ=255) aTGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGcccc > 3:294312/1‑149 (MQ=255) gCCTGAAGTAGTCAGACCAGAGGGGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTgg < 8:25993/149‑1 (MQ=255) cTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGt > 6:140553/1‑148 (MQ=255) tGAAGTAGTCAGACCAGAGGTGGTGGTAAGATCCCGGTGTGCAAGATTATTTATATTAATACAGTATTCAGGTGAGCCATGATACCTCCAGAACCGCAAAAGGGCCGTGGCCCGGCGCACAAACCACACAACCGATTTGCCCATgtgaa > 7:227576/1‑145 (MQ=255) gtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTg < 5:140553/149‑1 (MQ=255) gtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTg > 6:227140/1‑149 (MQ=255) gtCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTg > 8:196229/1‑149 (MQ=255) tCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTgg > 4:249824/1‑149 (MQ=255) aGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCg < 5:90614/149‑1 (MQ=255) ccAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGaa < 7:46719/149‑1 (MQ=255) agagGTGCTTGTAAGATCACGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAga < 4:108582/149‑1 (MQ=255) agagGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCgg > 6:134556/1‑145 (MQ=255) tGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCt > 6:53434/1‑149 (MQ=255) gTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCt < 8:201463/147‑1 (MQ=255) gTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTg < 5:227140/148‑1 (MQ=255) tAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTgg > 7:35938/1‑148 (MQ=255) tAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGt < 8:99526/149‑1 (MQ=255) ccGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGTGCCGTGGCACGGCGCACAATCCACACACCCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAgg < 5:299956/148‑1 (MQ=255) cgttgtgCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGaa < 1:338596/146‑1 (MQ=255) tgtgCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTg > 7:127802/1‑119 (MQ=255) tgtgCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTg < 8:127802/119‑1 (MQ=255) tgCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGcc < 4:294312/149‑1 (MQ=255) cctgaaTACTGTATTAATATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGaa > 7:241537/6‑143 (MQ=255) cctgaaTACTGTATTAATATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGaa < 8:241537/138‑1 (MQ=255) ctgaaTACTGTATTAATATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCg > 6:32194/5‑148 (MQ=255) ctgaaTACTGTATTAATATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCg > 5:326820/5‑148 (MQ=255) tatataTTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAg > 1:166359/3‑149 (MQ=255) tGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAg > 2:233462/1‑149 (MQ=255) atatTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAggg < 3:308487/148‑1 (MQ=255) atTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAc > 7:174081/1‑149 (MQ=255) atTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAc > 8:131014/1‑149 (MQ=255) atTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAc > 1:178840/1‑149 (MQ=255) | TGCAGTGCTGCAGCCCTAAGCGCTGTCTGTCTGGGATGGGCGGCAATCGAGCCAGGCAGCGTATGTGCGCTGGCATGGCCTGAAGTAGTCAGACCAGAGGTGCTGGTAAGATCCCGGTGTGCACGATACTGTATATTAATACAGTATTCAGGTGAGCCATGATTCCTCCAGTACCGCAAAAGGGCCGTGGCACGGCGCACAATCCACACAACCGCTTTGCCCCTGGTCATTCGGTGGCGGAAGATGATGGCTGGTACCAGGAAGTGCCGCAAACCCAGGGTAC > NC_002947/103684‑103966 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |