Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,035,781 | T→C | 7.1% | intergenic (+30/+1) | PP_0893 → / ← PP_0894 | ThiJ/PfpI family protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,035,781 | 0 | T | C | 7.1% | 159.1 / 2.1 | 56 | intergenic (+30/+1) | PP_0893/PP_0894 | ThiJ/PfpI family protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (27/25); new base C (2/2); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGACATCGCGGTGGACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTCGTCATCGGC > NC_002947/1035634‑1035922 | cGACATCGCGGTGGACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCtt > 6:266292/1‑149 (MQ=255) gACATCGCGGTGGACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCtt < 6:345756/148‑1 (MQ=255) cgcgGTGGACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGc > 5:9772/1‑148 (MQ=255) cgGTGGACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAAc < 5:266292/149‑1 (MQ=255) aCCAGGCGCATGGGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGGTCCTTAAAGGGCTGGGCACGCGTATTGTCTGCCAGGCCTAGATTGAGTTGGCAGCAGGTTGCCTGAAGCAACCCGCt < 1:64648/149‑1 (MQ=255) gcATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAg > 4:18713/1‑149 (MQ=255) gtgGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCAt > 4:288865/1‑149 (MQ=255) gATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCAtt > 2:266933/1‑147 (MQ=255) tGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAgg < 3:69408/149‑1 (MQ=255) aCCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTg > 1:360369/1‑147 (MQ=255) aCCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTg > 7:298294/1‑147 (MQ=255) cTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTgtagt < 6:9772/149‑1 (MQ=255) aCCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTgg < 1:266933/149‑1 (MQ=255) aCCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTg < 8:65203/148‑1 (MQ=255) cGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCAGGTTGCCTGAAGCAACCCGCt < 3:5004/117‑1 (MQ=255) cGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCAGGTTGCCTGAAGCAACCCGCt > 4:5004/1‑117 (MQ=255) tGGCCCGCGCAGCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCaa < 1:50327/149‑1 (MQ=255) ccGCGCACCCGGCCTGGCTTGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCtt < 5:14346/149‑1 (MQ=255) ccGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTg < 8:1137/132‑1 (MQ=255) ccGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTg > 7:1137/1‑132 (MQ=255) aCCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCca > 5:33208/1‑147 (MQ=255) ggCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGa < 6:27928/149‑1 (MQ=255) gCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGaa < 6:181580/149‑1 (MQ=255) ctggctggCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAata < 3:18713/149‑1 (MQ=255) gTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGaa > 1:198912/1‑135 (MQ=255) gTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGaa < 2:198912/135‑1 (MQ=255) gTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGcc > 1:322916/1‑149 (MQ=255) ccTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAatat > 4:56169/1‑135 (MQ=255) ccTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAatat < 3:56169/135‑1 (MQ=255) cTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATagaa < 8:182843/138‑1 (MQ=255) cTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATagaa > 7:182843/1‑138 (MQ=255) cTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTg > 1:95180/1‑149 (MQ=255) ttAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGc > 6:82718/1‑149 (MQ=255) aaGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCgg > 2:279485/1‑149 (MQ=255) tGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAAACTGCTCCACCCAGTCATTTAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCACTGCCGgcagca > 1:317232/1‑148 (MQ=255) gggCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGcaca > 8:225969/1‑149 (MQ=255) ggCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTgt > 5:184082/1‑83 (MQ=255) ggCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTgt < 6:184082/83‑1 (MQ=255) ggCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGcaca > 7:105553/1‑148 (MQ=255) ggCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACAt < 8:19917/149‑1 (MQ=255) gCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAATAACGCCCCTGCCGGCAGCACATa < 7:225969/149‑1 (MQ=255) cACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGGTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAg < 2:111643/149‑1 (MQ=255) tATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCgg > 4:6538/1‑133 (MQ=255) tATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCgg < 3:6538/133‑1 (MQ=255) tATTGTCTGACAGG‑CTTGATTGAGTTGACAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTTGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTgg > 1:194309/1‑149 (MQ=255) ttGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGc < 8:298294/148‑1 (MQ=255) tCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGtt > 6:55810/1‑149 (MQ=255) aCAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGttt < 2:95180/146‑1 (MQ=255) aCAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGttt < 3:288865/146‑1 (MQ=255) aCAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCt > 4:31885/1‑149 (MQ=255) cTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCgg > 7:88019/1‑149 (MQ=255) ttgattgaGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCgg > 5:198645/1‑148 (MQ=255) attgaGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCaa < 8:88019/148‑1 (MQ=255) gTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTc < 2:360369/149‑1 (MQ=255) caggTTGCCTGAAGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTCGTCATCgg > 6:294964/3‑149 (MQ=255) gggTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTc < 7:214243/140‑1 (MQ=255) gggTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTc > 8:214243/1‑140 (MQ=255) ggTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTCGTCATCGGc > 6:271154/1‑148 (MQ=255) ttCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTCGTCATCgg > 3:236067/1‑141 (MQ=255) ttCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTCGTCATCgg < 4:236067/141‑1 (MQ=255) | CGACATCGCGGTGGACCAGGCGCATGTGGATGGCAACCTGGTGACCGCACCGGCATGGCCCGCGCACCCGGCCTGGCTGGCGGCGTTCCTTAAAGTGCTGGGCACGCGTATTGTCTGACAGG‑CTTGATTGAGTTGGCAGCGGGTTGCTTCAGGCAACCTGCTCCACCCAGTCATTGAGGTTGTAGTAGTTGGTGACCCGGGCAATCTTGCCACAGTGAATATAGAAGAACGCCCCTGCCGGCAGCACATAGGTCTGGCCGTTTGCTGTCGGCAACCCTTCGTCATCGGC > NC_002947/1035634‑1035922 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |