| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,392,041 | C→G | 5.4% | intergenic (+72/‑43) | aspS → / → PP_1214 | aspartate‑‑tRNA ligase/transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,392,041 | 0 | C | G | 5.4% | 276.3 / 3.1 | 87 | intergenic (+72/‑43) | aspS/PP_1214 | aspartate‑‑tRNA ligase/transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (37/45); new base G (2/3); total (39/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.28e-01 | |||||||||||
CCCCTGGCATGGTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCT > NC_002947/1391896‑1392188 | ccccTGGCATGGTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATg < 2:229458/149‑1 (MQ=255) cccTGGCATGGTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATgg > 3:328133/1‑149 (MQ=255) gCATGGTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATggggcgg > 7:339944/1‑149 (MQ=255) aTGGTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCATGACggggcggga < 1:135790/149‑2 (MQ=255) gTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCg > 5:63204/1‑149 (MQ=255) gTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCATGACggggcgggacgg < 7:3478/149‑5 (MQ=255) aCGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑Ttg < 3:16876/149‑1 (MQ=255) ccAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGa < 5:29646/149‑1 (MQ=255) cAAGGCCCTGCGCGAACTGCACATCCGACGTGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGAAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGa > 1:209726/1‑149 (MQ=255) cAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGAt > 4:45718/1‑149 (MQ=255) aGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTc < 2:331711/149‑1 (MQ=255) aGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCAACCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTc < 1:219924/149‑1 (MQ=255) gCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCaa < 6:63204/149‑1 (MQ=255) cccTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACGAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCTCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCaaa < 5:195047/149‑1 (MQ=255) cccTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCaaa < 2:209726/149‑1 (MQ=255) cccTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCaaa < 3:347524/149‑1 (MQ=255) tGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGa > 5:176284/1‑149 (MQ=255) gAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCTTCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCg > 2:87087/1‑148 (MQ=255) gAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCgg > 4:267633/1‑149 (MQ=255) caTCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTa < 4:328133/149‑1 (MQ=255) caTCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTa < 8:75295/149‑1 (MQ=255) tCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATg > 8:266390/1‑149 (MQ=255) gAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCt < 3:91919/149‑1 (MQ=255) gAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCt < 3:96825/149‑1 (MQ=255) cgcgAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTc < 3:192601/135‑1 (MQ=255) cgcgAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGt < 6:283503/147‑1 (MQ=255) cgAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTACGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCTGGGCCGG‑‑‑TTCTGATTCAAAGGATTCGGCGACGTAATGGCTGGTCAt > 4:272849/1‑148 (MQ=255) gAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACATGGGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTc > 1:255200/1‑127 (MQ=255) gAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTc < 2:255200/126‑1 (MQ=255) gAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTc > 6:159834/1‑149 (MQ=255) gAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTc < 3:267633/149‑1 (MQ=255) aaCAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTcc < 8:339944/149‑1 (MQ=255) aGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAg > 2:89094/1‑149 (MQ=255) cAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTggg > 3:42673/1‑149 (MQ=255) aaGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGc < 2:91416/149‑1 (MQ=255) ggTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGa < 7:266390/149‑1 (MQ=255) gTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGaa < 5:159834/149‑1 (MQ=255) gTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGaa > 8:193055/1‑149 (MQ=255) tCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAAc < 5:342222/149‑1 (MQ=255) cGAGTAAGCAGTCCCCTGGCGCATCCAGAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGTGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACa < 7:284012/149‑1 (MQ=255) cGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACa > 8:70388/1‑149 (MQ=255) gAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGTCTGGTCATTCCAAGTGGGCGAACa > 8:325406/1‑148 (MQ=255) aGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAg < 5:305236/148‑1 (MQ=255) aGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAg > 3:46084/1‑148 (MQ=255) aGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTGTGCCGTTCGACGCAGGTTATTTCCCGTCCCCCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGCTTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAg < 6:272482/148‑1 (MQ=255) gCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCa > 7:172159/1‑149 (MQ=255) gCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCGTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCa < 2:157165/149‑1 (MQ=255) ccGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCaaa < 3:45718/149‑1 (MQ=255) gcATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAgcgc < 8:172159/149‑1 (MQ=255) ttCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGTGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCa < 7:114/148‑1 (MQ=255) ccACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGGTGGTGATTGCAAGTGGGCGAACATGAAGCCAGGCAAAGAGCGGCAgg > 6:223763/1‑149 (MQ=255) ccACAT‑GGATGCGCATTTGCGTTTCGACGCAGGTTTTTTCCCGTCACGCCCCGTCATGCGGCGGGGCCGT‑‑‑TTGGGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAAAATCACGCACCGCAAAGAGCGACAg > 8:114/1‑148 (MQ=255) acaT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGTGGGTTGTGATTAAAAGGATTAGGAGTAGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAg > 1:112111/1‑149 (MQ=255) acaT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGCGCGCCAGGAt > 7:224572/1‑149 (MQ=255) t‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGc > 4:173217/1‑148 (MQ=255) gATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGcc > 6:241726/1‑147 (MQ=255) tGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAaga < 6:176284/149‑1 (MQ=255) cgcCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAagag < 1:87087/148‑1 (MQ=255) gcCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAagagag > 5:112726/1‑149 (MQ=255) gCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAg < 3:173217/148‑1 (MQ=255) gCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAg < 4:46084/148‑1 (MQ=255) cGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGt < 7:193055/149‑1 (MQ=255) gTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGGGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAagaga > 3:79081/1‑140 (MQ=255) gTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGGGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAagaga < 4:79081/140‑1 (MQ=255) gTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCTAGGATGCCAag < 2:243341/137‑1 (MQ=255) gTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCTAGGATGCCAag > 1:243341/1‑137 (MQ=255) gTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTc > 6:123586/1‑149 (MQ=255) gACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCa < 7:70388/148‑1 (MQ=255) gCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTAt < 3:186026/71‑1 (MQ=255) gCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTAt > 4:186026/1‑71 (MQ=255) ggTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTg < 6:112726/149‑1 (MQ=255) gTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGc > 6:144174/1‑131 (MQ=255) gTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGc < 5:144174/131‑1 (MQ=255) ttttttCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGa > 7:274996/1‑149 (MQ=255) ttttttCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGa > 7:171803/1‑149 (MQ=255) tcccgtcccgCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGt > 6:216894/1‑149 (MQ=255) cccgtcccgCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGt > 8:247413/1‑148 (MQ=255) ccgtcccgCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGa < 5:216894/149‑1 (MQ=255) ggccccgCCCCATGACGGGGCGGGACCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAaga < 2:307112/97‑1 (MQ=38) ggccccgCCCCATGACGGGGCGGGACCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAaga > 1:307112/4‑100 (MQ=38) ggccccgCCCCATGACGGGGCGGGACCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGaa > 5:272975/4‑149 (MQ=255) cgtcccgCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGaa < 5:223763/149‑1 (MQ=255) ccgCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATc < 7:259497/139‑1 (MQ=255) ccgCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATc > 8:259497/1‑139 (MQ=255) ccGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTc < 1:89094/149‑1 (MQ=255) ccGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTc > 7:145671/1‑149 (MQ=255) tCATGGGGCGGGGCCGT‑‑‑TTGTTATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCt < 7:325406/149‑1 (MQ=255) cATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGAc < 1:338674/141‑1 (MQ=255) cATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGAc > 2:338674/1‑141 (MQ=255) | CCCCTGGCATGGTCGACGCCAAGGCCCTGCGCGAACTGCACATCCGAC‑TGCGCGAACAGACCAAGGTCGAGTAAGCAGTCCCCGGGCGCATCCACAT‑GGATGCGCCTTTGCGTTTCGACGCAGGTTTTTTCCCGTCCCGCCCCGTCATGGGGCGGGGCCGT‑‑‑TTGTGATTCAAAGGATTCGGAGTCGTTATGGCTGGTCATTCCAAGTGGGCGAACATCAAGCACCGCAAAGAGCGCCAGGATGCCAAGAGAGGCAAGGTCTTCACCAAGTGGATCCGTGAACTGACGGTCGCT > NC_002947/1391896‑1392188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |