Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,680,468 | G→A | 12.7% | Q263* (CAA→TAA) ‡ | PP_2350 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,680,468 | 0 | G | A | 12.7% | 115.7 / 7.6 | 47 | Q263* (CAA→TAA) ‡ | PP_2350 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (16/25); new base A (3/3); total (19/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.74e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.37e-01 |
GGTGATCACCCAGACCGACCTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTGCCACCTTGGTC > NC_002947/2680324‑2680612 | ggTGATCACCCAGACCGACGTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAgg < 6:286482/149‑1 (MQ=255) cACCCAGACCGACCTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGCCCTGCAACAGGCCTTCg < 7:235899/149‑1 (MQ=255) aCCCAGACCGACCTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACGAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGTATCGCGAAGCCCTGCCACAGGCCTTct > 8:235899/1‑147 (MQ=255) aCCCAGACCGACCTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGCCCTGCAACAGGCCTTCg < 5:72955/148‑1 (MQ=255) aCCCAGACCGACCTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGCCCTGCAACAGGCCTTCg > 6:72955/1‑148 (MQ=255) aGACCGACCTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTc < 2:70328/149‑1 (MQ=255) accTGATCGCCGGCCTCAAGCGTCAGTTGCTCGAGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGtt > 1:42878/1‑149 (MQ=255) accTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGttt < 5:354016/149‑1 (MQ=255) accTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGttt < 7:154503/149‑1 (MQ=255) accTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGttt > 5:196635/1‑149 (MQ=255) accTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGttt < 6:196635/149‑1 (MQ=255) tGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCg > 4:249138/1‑149 (MQ=255) tCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGGGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTgg < 1:6492/149‑1 (MQ=255) gCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTggg < 8:266435/148‑1 (MQ=255) ccGGCCTCAAGCGGCAGTTGCTC‑AGCAATATCGAGGCTTCAGAAAACCGGGTCCCAGCTGTGTGACCAGTCGATGGAGCCGGCCGCTACCACCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCGTCGCTGTCGCGTTTGCGTGGGTa < 1:155925/149‑1 (MQ=255) cTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGACGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTacac > 7:214047/1‑147 (MQ=255) tCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGACGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTc < 8:214047/149‑1 (MQ=255) ttGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGt < 1:210859/149‑1 (MQ=255) gCTC‑AGCAAGATAGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCATGTTGCAGGGCTTCGCTGTCGCGTGTGCGTGGGTGCACCAGGAAGGTCGGGTAg > 8:165329/1‑149 (MQ=255) tC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGCCCTGCAACAGGCCTTCg < 7:228809/108‑1 (MQ=255) tC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGCCCTGCAACAGGCCTTCg > 8:228809/1‑108 (MQ=255) atcAAGATCGAGGCTTCAGATAACCGGGTCCGAGCGTTGTGACCAGTCTCTGGCGCCTGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGGAGGGCTTCGCTGTCTCGTTTGCGTGGGTACACGAGTAAGGTCGGGTATGt < 2:42878/145‑1 (MQ=255) aGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTg > 5:302476/1‑148 (MQ=255) cAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACAcc < 2:19964/128‑1 (MQ=255) cAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACAcc > 1:19964/1‑128 (MQ=255) aGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTc < 3:249138/149‑1 (MQ=255) cAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCg < 8:183605/148‑1 (MQ=255) aGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGt > 6:30712/1‑149 (MQ=255) ccGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGt > 4:349012/1‑124 (MQ=255) ccGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGt < 3:349012/124‑1 (MQ=255) gTCACAACGCTGGGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTc < 4:62422/147‑1 (MQ=255) gTCACAACGCTGGGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTc > 3:62422/1‑147 (MQ=255) gTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACAcgccg < 1:172018/149‑1 (MQ=255) tgtgACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCt > 7:6074/1‑149 (MQ=255) cAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTc > 2:214873/1‑146 (MQ=255) cgcCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGc < 8:6074/149‑1 (MQ=255) gcCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGca > 3:38480/1‑149 (MQ=255) gcCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGca > 3:244894/1‑149 (MQ=255) tACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGTGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCcgcg > 3:62467/1‑149 (MQ=255) ccAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTg > 6:322490/1‑149 (MQ=255) cGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGaa < 4:38480/149‑1 (MQ=255) cGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGaa < 1:214873/149‑1 (MQ=255) gcgcAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGt < 6:302476/149‑1 (MQ=255) tCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTg < 4:244894/149‑1 (MQ=255) gcgAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGc < 4:10703/120‑1 (MQ=255) gCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTGCCACCTTg < 1:263894/149‑1 (MQ=255) ttGCAGGGCTTCGCTGTCGCGTTTGCGCGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTGCCACCTTGGTc < 5:322490/147‑1 (MQ=255) gCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGc > 7:196595/1‑103 (MQ=255) gCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGc < 8:196595/103‑1 (MQ=255) | GGTGATCACCCAGACCGACCTGATCGCCGGCCTCAAGCGTCAGTTGCTC‑AGCAAGATCGAGGCTTCAGATAACCGGGTCCCAGCGTTGTGACCAGTCGCTGGCGCCGGCAGCTACCAGCCGGCGCAGGATCGCGAAGGCCTGTTGCAGGGCTTCGCTGTCGCGTTTGCGTGGGTACACCAGGAAGGTCGGGTAGGTGAACTCCGGTGCCTGCGGTACCCGCTCGAACACGCCGCTGTCCAGATAGGCCTGCACCACCCGCGTGCGGAAGTAGCCACTGCCACCTTGGTC > NC_002947/2680324‑2680612 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |