| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,551 | C→G | 10.2% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,551 | 0 | C | G | 10.2% | 212.6 / 14.5 | 88 | T1019T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (40/38); new base G (4/5); total (45/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.07e-01 | |||||||||||
ACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA > NC_002947/197405‑197693 | aCCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGTAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCAt < 8:89744/149‑1 (MQ=37) gATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCg > 8:162000/1‑149 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 7:130967/149‑1 (MQ=37) aCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa < 4:230369/149‑1 (MQ=37) gACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGc > 1:171548/1‑149 (MQ=37) aCTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 4:29466/1‑149 (MQ=37) aCTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc > 2:328851/1‑149 (MQ=37) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 5:197793/147‑1 (MQ=37) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 8:70739/147‑1 (MQ=37) ggTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGc < 6:173988/148‑1 (MQ=37) gTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑aa < 1:91477/149‑1 (MQ=37) tCGATGCCACCACCGCGACCCTGACGGCGAGCACGTCCGTCACCGAAGCCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGACCAGACCCCGGTAACCGTGACCCTGTCCAACGGCGAAACCATTACCGTTGAAGCCGGc > 5:236340/1‑146 (MQ=11) tGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGAccc < 3:272365/149‑1 (MQ=37) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCa < 1:195886/148‑1 (MQ=37) ccaccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAg < 5:90214/149‑1 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAgg > 4:352742/1‑149 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAgg < 7:297338/149‑1 (MQ=37) caccacCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAgg > 2:281363/1‑149 (MQ=37) accaccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAggg > 2:235125/1‑149 (MQ=37) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAggg > 1:118783/1‑147 (MQ=37) caccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAggg > 5:79159/1‑147 (MQ=37) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCg > 4:80652/1‑149 (MQ=37) gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGt < 1:328851/149‑1 (MQ=37) cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCAGC‑AAGACCCAGGGCAGCGTc > 1:90755/1‑149 (MQ=37) cccTGACGGCGCGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCCTGATCCTGAGCAATCCTGCCCAGACCCCGGTAACCGAGACCCTGACCAACGGCAAACCCATTACCTGTGAAGCCGGC‑ACGACCCAGGCCAGCGTc > 8:166593/1‑146 (MQ=11) cgtGAGGGCGAGCCCGTCGGTCAGCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAAGCGTGACGCTGTCCAACGGCCATACCTTTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGAtt < 7:166593/147‑1 (MQ=11) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTCACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGAtt > 6:78032/1‑148 (MQ=37) tgccGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGCTCCTGAGCAATCCTGCCCAGCCGCCGGTCACCGTGACCCTGTCCCCCGGCCACACCATGACCGTTGCAGCCGGC‑AAGCCCCCGGGCAGCGGCGAttgc > 8:134821/4‑147 (MQ=11) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTcc > 1:238199/1‑146 (MQ=37) ggCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTcc < 2:238199/146‑1 (MQ=37) gCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGAGCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGCCAGCGTCGATTTCCAGAc < 5:199601/149‑1 (MQ=21) ccGGCGGTCACCGAAGGCGGCGGGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGCCGCCGGTAACCGGGACCCTGTCCCACGGCCAACCCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 7:134821/149‑1 (MQ=11) ggTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 3:80652/148‑1 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 7:162000/148‑1 (MQ=37) ggTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATg < 1:315768/149‑1 (MQ=37) cACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACg > 6:315896/1‑149 (MQ=37) cACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACAGTGACCCTGGCCCACGGCCAAACAATTACCGTTGAAGCCGGC‑AAGACCCAGGGGAGCGGCGAGTTGCAGCCCCCGGCGATTGACg > 6:131162/1‑149 (MQ=11) ccGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 6:128665/1‑149 (MQ=37) cGAAGGCGGCTTGATCACCT‑TCACCGTGATCATGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCGTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCt < 6:79159/149‑1 (MQ=255) aaGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 5:282065/1‑148 (MQ=37) gataTCACCTAACACGGT‑ATCCTGACCAATCCTGCCCAGACGCCGGTAACCGTTACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACg < 7:51693/145‑1 (MQ=11) aTCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAATCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 5:151769/1‑149 (MQ=37) aTCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAATCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 6:151769/149‑1 (MQ=37) aCCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGGCGATTTGCCGACCCCGGCGAATGAAGGGGACAACAACggagaacg > 8:51693/1‑143 (MQ=11) ccT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAcc < 1:281363/149‑2 (MQ=25) cT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAccg > 6:129616/1‑147 (MQ=25) t‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑aa < 5:186719/86‑1 (MQ=255) t‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑aa > 6:186719/1‑86 (MQ=255) cacCGTTATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 3:280145/149‑1 (MQ=255) ccGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCAGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGc < 2:90755/149‑1 (MQ=255) tGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTc > 4:297112/1‑149 (MQ=21) aTCCTGAGCAATCCTGCCCAGACGCCGGTAACCCTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTc < 2:111331/147‑1 (MQ=18) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGCCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCAt > 2:108118/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 7:280644/1‑149 (MQ=37) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 6:88057/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATc > 2:81843/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACAATc > 2:155729/1‑149 (MQ=17) tGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACACAGGCGAATCACGTCTACAACAACGTTAGTACCGTAAGCTTCACCAt > 8:167971/1‑148 (MQ=11) tGAGCAATCCTGCCAAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGCCGTCTACAACAACGGTACGACTGTCAGCGTCACCATc > 7:134172/1‑149 (MQ=255) aGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATc > 2:67538/1‑147 (MQ=37) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt < 7:70377/109‑1 (MQ=35) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCAAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 8:70377/1‑109 (MQ=25) tGCCCAGACGCCGGTAACCGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGCACGCca > 7:55731/1‑149 (MQ=255) ccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACaacaac > 1:60121/1‑112 (MQ=25) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 6:322483/149‑1 (MQ=255) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGGCACCATCGAGAACGCCACAgg > 5:353608/1‑149 (MQ=11) cAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg < 5:128665/149‑1 (MQ=17) aGACGCCGGTAACCGTGACCCTGTCCAACCGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCCATATCAAGACCCCCGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATAGATAACGCCACAgtc > 4:12763/1‑147 (MQ=11) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 6:323199/149‑1 (MQ=37) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 5:315896/149‑1 (MQ=37) aCGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 3:29466/149‑1 (MQ=17) ggTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt < 5:108045/149‑1 (MQ=255) ggTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg > 4:28993/1‑141 (MQ=17) ggTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg < 3:28993/141‑1 (MQ=17) gTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt < 1:67538/149‑1 (MQ=37) tAACCGTGACCCTGTCCAACGGCCAAACCATTACAGTTGTAGCCGTC‑AAGACCCAGGTCAGCGTCGATTTCCATACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCCTCACCATCGAGAACGCCACAGGCGGTAAtt < 5:78032/147‑1 (MQ=11) tAACCGTGACCCTGCCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 1:108118/149‑1 (MQ=14) ccGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 5:223314/149‑1 (MQ=16) cGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑ATGACCCAGGCCAGCGTCGATTTCCTGACCGGGGCGTATGAGGTCTACATCAAGGGTTCGACTGTCAGCGTCACCATCGAGAACGGCTCTGGCGGTAATTTCGTGc < 6:236340/149‑1 (MQ=11) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACACCGGGTCGACTGTCCGCGTCACGATCGAGAACGCCACACGCGGTAATTTGGAGc > 4:15908/1‑148 (MQ=11) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACt > 1:329796/1‑148 (MQ=12) cccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTg > 3:255285/1‑149 (MQ=32) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAc < 3:352742/149‑1 (MQ=32) cAACGGCCAAACGATTACCGTTGAAGACGGCAAAGAACCAGTGCAGATTCGACTTCCAGACACAGGCGAATTAAGTCTACAACAACGGTTCGAATGTCAGAGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTTAcc > 1:235330/1‑146 (MQ=11) aCGGCCAAACGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc < 2:302650/149‑1 (MQ=12) ccAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGa > 6:126000/1‑149 (MQ=34) aaCGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 7:167759/126‑1 (MQ=12) aaCGATTACCGTTGAAGCCGGC‑AAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTAGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 8:167759/1‑126 (MQ=255) | ACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCT‑ACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGC‑AAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGA > NC_002947/197405‑197693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |