Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,171,773 T→C 7.4% G15G (GGT→GGC) ‡ PP_2784 → short‑chain dehydrogenase/reductase family oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,171,7730TC 7.4% 146.2 / 2.3 54G15G (GGT→GGC) ‡PP_2784short‑chain dehydrogenase/reductase family oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (25/25);  new base C (2/2);  total (27/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

CCCGGCCTGAAGAAATTGCCGACGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATCAAGCGAACATCGCCGAT  >  NC_002947/3171629‑3171920
                                                                                                                                                |                                                                                                                                                    
cccGGCCTGAAGAAATTGCCGAGGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTg                                                                                                                                                  >  7:225753/1‑149 (MQ=255)
cccGGCCTGAAGAAATTGCCGACGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTg                                                                                                                                                  <  7:215325/149‑1 (MQ=255)
 ccGGCCTGAAGAAATTGCCGACGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTgg                                                                                                                                                 >  3:310011/1‑149 (MQ=255)
       tGAAGAAATTGCCGACGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCgcgc                                                                                                                                          >  5:155356/1‑149 (MQ=255)
           gaaATTGCCGACGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTc                                                                                                                                      >  7:126758/1‑149 (MQ=255)
                  ccGACGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGaaa                                                                                                                               <  1:220889/149‑1 (MQ=255)
                          gTGCTTTATCTTGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCACCGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCa                                                                                                                       <  3:302546/149‑1 (MQ=255)
                                  tCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTGCGCACGATTGTGATTACCGGCGCGGCCAATGGTATTgg                                                                                                                                                 <  1:96214/116‑1 (MQ=255)
                                  tCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTGCGCACGATTGTGATTACCGGCGCGGCCAATGGTATTgg                                                                                                                                                 >  2:96214/1‑116 (MQ=255)
                                  tCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTc                                                                                                                                      <  3:76210/126‑1 (MQ=255)
                                  tCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGACAATGGTATTGG‑CCGCGCCGTc                                                                                                                                      >  4:76210/1‑126 (MQ=255)
                                   cTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGcc                                                                                                              >  6:120726/1‑149 (MQ=255)
                                        cGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCa                                                                                                         >  3:321787/1‑149 (MQ=255)
                                             gcgGCCTTTACATCCCGGCCCATGTCCGCTCCGCAACCGGCGTATTTAAAATCCCTTTCGCCTTTTCCGACCTTTTTTCATTACCGGCGC‑GCCAATTGTTTTGGCCCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCttt                                                                                                    <  8:225753/149‑1 (MQ=255)
                                              cgGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCtttt                                                                                                   >  2:187240/1‑149 (MQ=255)
                                              cgGCCGGTACTCCCCGGCCCAAGCCCTGTCCGCCACCGGCGGATTTAAAATCCCAGCCGCCCGTAACCCACGATTGTTTTACCCGGCGCGCCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCtttt                                                                                                   <  2:306513/149‑1 (MQ=255)
                                                         tCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑c                                                                                                                                               <  4:207503/94‑1 (MQ=255)
                                                          cACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGa                                                                                       >  8:101981/1‑149 (MQ=255)
                                                          cACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTAAGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGACGTCGCGGAAAGTTTAGCAGCCCAGGCAGAGCACCTTTTGATCTTGCTTGa                                                                                       >  3:249587/1‑149 (MQ=255)
                                                           aCGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGAt                                                                                      <  3:247007/149‑1 (MQ=255)
                                                              ggCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATTCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCgg                                                                                   <  5:178526/149‑1 (MQ=255)
                                                                 gAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGGTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGAt                                                                                <  8:275605/149‑1 (MQ=255)
                                                                       cTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGc                                                                           >  1:43989/1‑148 (MQ=255)
                                                                       cTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGc                                                                           >  5:110755/1‑148 (MQ=255)
                                                                         gTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCg                                                                                    >  6:355766/1‑137 (MQ=255)
                                                                         gTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCg                                                                                    <  5:355766/137‑1 (MQ=255)
                                                                          tCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAAcc                                                                       <  2:71631/149‑1 (MQ=255)
                                                                                aaCGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCGTGATAGGGATCTGGAAACCGTGCAg                                                                 >  2:182212/1‑149 (MQ=255)
                                                                                      ggATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCAGTTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGgggtgg                                                           <  1:254589/149‑1 (MQ=255)
                                                                                         ttGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGTTCTTGCTTGATCGGGATCTGGCAACCTTGCAGgggtgggt                                                         >  5:308920/1‑148 (MQ=255)
                                                                                         ttGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATcttgc                                                                                           <  4:318049/114‑1 (MQ=255)
                                                                                         ttGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATcttgc                                                                                           >  3:318049/1‑114 (MQ=255)
                                                                                           gAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGgggtgg                                                           >  5:159607/1‑144 (MQ=255)
                                                                                           gAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGgggtgg                                                           <  6:159607/144‑1 (MQ=255)
                                                                                                     tGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGaa                                            <  5:120726/149‑1 (MQ=255)
                                                                                                          ccgTTACGCACGATGGTGATTACCGGCGCGGCCAATGGTTTTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGc                                       <  4:62413/147‑1 (MQ=255)
                                                                                                          cAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGc                                       <  4:310011/149‑1 (MQ=255)
                                                                                                                  cACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCGTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTGGCCGCTCGTa                               >  5:123558/1‑149 (MQ=255)
                                                                                                                   aCGATTGTTATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTAt                              <  1:187240/149‑1 (MQ=255)
                                                                                                                   aCGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTAt                              >  2:305221/1‑149 (MQ=255)
                                                                                                                   aCGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTAt                              <  2:43989/149‑1 (MQ=255)
                                                                                                                    cGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATc                             <  7:101981/149‑1 (MQ=255)
                                                                                                                         gtgATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGaaa                         <  6:110755/148‑1 (MQ=255)
                                                                                                                          ttataaCCGGCGCGGCCAATGGTTTTGG‑CGGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGTATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGaaa                         <  4:165757/142‑1 (MQ=255)
                                                                                                                          tgATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGaaa                         >  3:165757/1‑147 (MQ=255)
                                                                                                                                     gcgGCCAATACCATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATc                   >  7:339792/1‑142 (MQ=255)
                                                                                                                                     gcgGCCAATACCATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATc                   <  4:316154/142‑1 (MQ=255)
                                                                                                                                     gcgGCCAATACCATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATc                   >  3:316154/1‑142 (MQ=255)
                                                                                                                                     gcgGCCAATACCATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATc                   <  8:339792/142‑1 (MQ=255)
                                                                                                                                        gCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGa                           >  6:179744/1‑131 (MQ=255)
                                                                                                                                        gCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGa                           <  5:179744/131‑1 (MQ=255)
                                                                                                                                          cAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATCAAGCGAACATCg       >  6:51436/1‑149 (MQ=255)
                                                                                                                                             tGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATCAAGCGAACATCGcc     >  7:56030/1‑148 (MQ=255)
                                                                                                                                               gTATTGG‑CCCCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTATTGATCTTGATTGATCGGGATCTGGCAACCATGCACGCGTGGCTCACCGAGGCCGAATATGCCGATAGTATCGAAACCCATCCAGCGAACATCCCCCAt  >  8:148132/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
CCCGGCCTGAAGAAATTGCCGACGCGGTGCTGTATCTGGCCGAGCGCGGCCTGTACATCACGGGCGAAGTCCTGTCCGTCAACGGCGGATTGAAAATGCCATGAGCCAGTTACGCACGATTGTGATTACCGGCGCGGCCAATGGTATTGG‑CCGCGCCGTCGCGGAAAGTTTTGCAGCCCAGGCCGAGCACCTTTTGATCTTGCTTGATCGGGATCTGGCAACCTTGCAGGGGTGGGTCACCGAGGGCGAATTTGCCGCTCGTATCGAAACCCATCAAGCGAACATCGCCGAT  >  NC_002947/3171629‑3171920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑