Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,223,113 | C→T | 7.1% | intergenic (‑420/+140) | PP_2823 ← / ← PP_2824 | methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,223,113 | 0 | C | T | 7.1% | 157.2 / 2.4 | 56 | intergenic (‑420/+140) | PP_2823/PP_2824 | methyl‑accepting chemotaxis transducer/TetR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (29/23); new base T (2/2); total (31/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.17e-01 |
GCCTTGGTGCTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGA > NC_002947/3222976‑3223258 | gcCTTGGTGCTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGTGCTATCGGGGc > 4:214917/1‑149 (MQ=255) gcCTTGGTGCTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGc < 7:57211/149‑1 (MQ=255) gcCTTGGTGCTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGc < 3:325459/149‑1 (MQ=255) gcCTTGGTGCTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTGATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACCTGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGTGCTATCGGGGc > 4:219224/1‑149 (MQ=255) tGCTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGc > 5:353467/1‑149 (MQ=255) cTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCtt > 8:47951/1‑149 (MQ=255) cTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCtt < 5:58356/149‑1 (MQ=255) cTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCtt < 3:350891/149‑1 (MQ=255) tAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTg > 2:258249/1‑149 (MQ=255) tAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTg > 3:112907/1‑149 (MQ=255) gCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGtt > 2:242833/1‑149 (MQ=255) cccATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTCTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTg < 4:17059/149‑1 (MQ=255) cGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGc < 7:47951/148‑1 (MQ=255) ccACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCgg < 2:123664/149‑1 (MQ=255) gTTGTGTTTTATTTGTTATATCACGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGTGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGggcggc < 3:219224/148‑1 (MQ=255) gTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGTGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGggcggc < 3:214917/148‑1 (MQ=255) tgtgTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGt > 7:76417/1‑149 (MQ=255) ttttATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTgcg > 6:218351/1‑149 (MQ=255) aTTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGcga < 7:13249/148‑1 (MQ=255) tttGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGcgacg < 6:353467/149‑1 (MQ=255) tttGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGcgac > 3:201524/1‑148 (MQ=255) gTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCt > 8:185637/1‑99 (MQ=255) gTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCt < 7:185637/99‑1 (MQ=255) gTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGcgacga > 1:307143/1‑147 (MQ=255) aaGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAggcgg > 1:1105/1‑149 (MQ=255) aTACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCg > 8:227599/1‑149 (MQ=255) aGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCCGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGttt > 5:291966/1‑149 (MQ=255) ttGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTggg < 4:112907/148‑1 (MQ=255) ttGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTggg < 1:258249/148‑1 (MQ=255) ttACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGa > 6:123365/1‑149 (MQ=255) ttACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGa > 2:79798/1‑149 (MQ=255) aCATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACg > 5:14876/1‑149 (MQ=255) aCATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACg > 4:107202/1‑149 (MQ=255) aCATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACg > 2:74442/1‑149 (MQ=255) gCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGa > 4:268134/1‑125 (MQ=255) gCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGa < 3:268134/125‑1 (MQ=255) gCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCtt > 2:114081/1‑149 (MQ=255) gCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCtt > 7:290840/1‑149 (MQ=255) aaGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTcc < 4:77858/149‑1 (MQ=255) aGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTc > 6:242466/1‑147 (MQ=255) gACGCAATGGCGCCTGAGCCTGAAAAAAGCTGGGAAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGAGCGGCAAGGCGCGGGGCGGAAGTTGCGCTACTACGTCAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAg < 1:74442/149‑1 (MQ=255) gACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAg > 4:65529/1‑149 (MQ=255) aaTGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAg > 5:359351/1‑149 (MQ=255) aaTGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAg > 8:340071/1‑149 (MQ=255) aTGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAgg > 3:264682/1‑149 (MQ=255) tGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGgc < 6:359351/149‑1 (MQ=255) gcgcCAGAGCCTGCAAAAAGCACGGCAGGCGCGATCGGGGCCTGGTGCTAGGGCTGGATCGGCAAGGCGCGGGGCGGCAGCTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCCTGGAAGgcgt < 8:123710/149‑2 (MQ=255) tGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCg > 7:88747/1‑149 (MQ=255) gCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGAGCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCgg < 5:218351/149‑1 (MQ=255) cAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCTAGGGAAGGCGCCGGGTCTACCg < 7:227599/147‑1 (MQ=255) aaaaaGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCgg > 4:188902/1‑147 (MQ=255) aaaaaGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGa < 2:307143/149‑1 (MQ=255) aaGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGc > 7:66694/1‑149 (MQ=255) gcaggCGCGATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGGTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAg < 1:242833/149‑1 (MQ=255) caggCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAgg < 7:340071/149‑1 (MQ=255) aggCGCTTTCGGGGCCTGGTGCTTGGGTTGTATCGGCAAGGCGCGGTGCGGCTGTTGCGCTACGACGGAAGGCGGCTAAGACACGAGCTGTGTGGTGTGGGTGACGCCTTCCAGTGATGTCGCCGGGTCTACCGGGAGGCGTCTTAGGa < 8:290840/149‑1 (MQ=255) | GCCTTGGTGCTAAAGCCCATTTTCGCTCCTGCCACTTGGTTGTGTTTTATTTGTTATATCAAGTGTTTTGTAAAATACAGGAGTTTTGCTTACATGCAAGACGCAATGGCGCCAGAGCCTGCAAAAAGCAGGGCAGGCGCTATCGGGGCCTGGTGCTTGGGTTGGATCGGCAAGGCGCGGGGCGGCAGTTGCGCGACGACGGAAGGCGGCGAAGACACGAGCGGTTTGGTGGGGGTGACGCCTTCCAGGGAAGGCGCCGGGTCTACCGGGAGGCGACTTAGGA > NC_002947/3222976‑3223258 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |