| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,579,640 | A→T | 18.2% | intergenic (+409/‑226) | PP_5589 → / → benR | rhs repeat‑associated core domain‑containing protein/BenABC operon transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,579,640 | 0 | A | T | 18.2% | 42.4 / 5.1 | 22 | intergenic (+409/‑226) | PP_5589/benR | rhs repeat‑associated core domain‑containing protein/BenABC operon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base A (10/8); new base T (2/2); total (12/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.83e-01 | |||||||||||
CACCTGGTGTTAGAGCTGATATGCGCCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGA > NC_002947/3579493‑3579787 | cACCTGGTGTTAGAGCTGATATGCGCCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATa < 3:115800/148‑1 (MQ=255) tgtTAGAGCTGATATGCGCCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAaca < 4:270227/149‑1 (MQ=255) gCTGATATGCGCCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGTTTATCGAaca > 7:292121/1‑142 (MQ=255) gCTGATATGCGCCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGTTTATCGAaca < 8:292121/142‑1 (MQ=255) gCTGATATGCGCCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGa > 2:212072/1‑149 (MQ=255) gcgcCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCa < 4:157076/148‑1 (MQ=255) ggCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAg > 3:69224/1‑149 (MQ=255) gCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGTTTATCGAacagt > 8:278582/1‑114 (MQ=255) gCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGTTTATCGAacagt < 7:278582/116‑3 (MQ=255) aTTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAAc > 8:219413/1‑107 (MQ=255) aTTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGcc > 6:260491/1‑148 (MQ=255) gaTTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATc < 1:212072/149‑1 (MQ=255) acacGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTg < 7:276747/149‑1 (MQ=255) gCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCt < 4:69224/149‑1 (MQ=255) gCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACAACACTCCGCAGCAGTCCGCTATCCGCCCAGCCAAAACCATCGTTGCATTGCCCAACCCCCGCCTTTTAGCt > 3:133563/1‑149 (MQ=255) cTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAg > 2:79974/1‑149 (MQ=255) ccTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCt < 5:260491/149‑1 (MQ=255) cAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTccc < 2:244793/128‑1 (MQ=255) cAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAAAGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTccc > 1:244793/1‑128 (MQ=255) gCCTCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGcc < 4:199200/96‑1 (MQ=255) gCCTCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGcc > 3:199200/1‑96 (MQ=255) cccGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCt > 2:202488/1‑149 (MQ=255) tAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGAGCTGCCAGCCCGATAGAATGa > 8:270558/1‑149 (MQ=255) | CACCTGGTGTTAGAGCTGATATGCGCCAAATTTACCCGATCGGCATTGACGAGATTATTGAACACGCCAGCCCGTACCGCCGGCACCTGGAGCGCTTGGTCCGCCCCTATGTGCAGGCCCCGCAAGTACCGGAAGATACTGTTCGATAAACGAACACACATGACTCCGCAGCTGTCCGCTATCCGCCCAGCCAATCCCATCGTTGCATTGCCCAACCCCCGCCTTTTTGCTGTAGTGTCCCCTATCCGCCGGCTGTCGCCTGCCCCTGCGACGCGCTGCCAGCCCGATAGAATGA > NC_002947/3579493‑3579787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |