Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,759,481 C→G 7.0% I38M (ATC→ATG folEB → GTP cyclohydrolase I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,759,4810CG 7.0% 179.6 / 3.9 57I38M (ATC→ATGfolEBGTP cyclohydrolase I
Reads supporting (aligned to +/- strand):  ref base C (24/29);  new base G (2/2);  total (26/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01

CCCGGCTGGAACTGATTCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCCTGCTGGACGCCTGGGGG  >  NC_002947/3759333‑3759619
                                                                                                                                                     |                                                                                                                                          
cccGGCTGGAACTGATTCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATc                                                                                                                                            <  1:342644/149‑1 (MQ=255)
 ccGGCTGGAACTGATTCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATc                                                                                                                                            >  6:70455/1‑148 (MQ=255)
 ccGGCTGGAACTGATTCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCg                                                                                                                                           >  6:9057/1‑149 (MQ=255)
  cGGCTGGAACTGATTCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGa                                                                                                                                          <  1:232273/149‑1 (MQ=255)
            tGATTCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGt                                                                                                                                 >  3:174142/1‑148 (MQ=255)
                tCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAgg                                                                                                                             >  4:56945/1‑148 (MQ=255)
                   tACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATcc                                                                                                                         <  7:171370/149‑1 (MQ=255)
                     cGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCaa                                                                                                                       <  5:325712/149‑1 (MQ=255)
                      gCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGCCCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATcc                                                                                                                         >  6:370698/1‑146 (MQ=255)
                      gCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAg                                                                                                                      <  5:291078/149‑1 (MQ=255)
                         ttGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAAc                                                                                                                   >  1:244599/1‑149 (MQ=255)
                                   gTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCa                                                                                                         <  4:155213/149‑1 (MQ=255)
                                       aaGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGt                                                                                                     <  3:56945/149‑1 (MQ=255)
                                                accacTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCAc                                                                                            >  5:26268/1‑149 (MQ=255)
                                                 ccacTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGc                                                                                                       <  4:203263/137‑1 (MQ=255)
                                                 ccacTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGc                                                                                                       >  3:203263/1‑137 (MQ=255)
                                                       gATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCgg                                                                                      <  5:9057/148‑1 (MQ=255)
                                                         tataCATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCg                                                                                   <  5:70455/149‑1 (MQ=255)
                                                            aCATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAg                                                                                                                      <  6:252574/111‑1 (MQ=255)
                                                            aCATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAg                                                                                                                      >  5:252574/1‑111 (MQ=255)
                                                            aCATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGAt                                                                                >  8:155286/1‑149 (MQ=255)
                                                             cATGATGATCTCAGCATTACCCGACGTTTCCGTCACCGACCGGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGAt                                                                                <  7:99153/148‑1 (MQ=255)
                                                             cATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGAt                                                                                <  2:244599/148‑1 (MQ=255)
                                                                     gCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTc                                                                       >  8:123595/1‑149 (MQ=255)
                                                                       tCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTCCCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGa                                                                     >  3:42204/1‑149 (MQ=255)
                                                                          gCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCt                                                                  >  7:81398/1‑149 (MQ=255)
                                                                           cATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTg                                                                 >  5:318565/1‑149 (MQ=255)
                                                                            aTTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGTCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGc                                                                <  4:252037/149‑1 (MQ=255)
                                                                            aTTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAgg                                                                         <  8:63336/140‑1 (MQ=255)
                                                                            aTTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAgg                                                                         >  7:63336/1‑140 (MQ=255)
                                                                                  cGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTaa                                                                                                                               >  6:200800/1‑80 (MQ=255)
                                                                                  cGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTaa                                                                                                                               <  5:200800/80‑1 (MQ=255)
                                                                                  cGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCAc                                                          <  7:252197/149‑1 (MQ=255)
                                                                                       tttCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCAt                                                     <  1:156010/149‑1 (MQ=255)
                                                                                        ttCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATg                                                    >  4:55516/1‑149 (MQ=255)
                                                                                           cGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATGGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCa                                                           <  7:336020/139‑1 (MQ=255)
                                                                                           cGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATGGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCa                                                           <  7:331281/139‑1 (MQ=255)
                                                                                           cGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATGGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCa                                                           >  8:336020/1‑139 (MQ=255)
                                                                                           cGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATGGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCa                                                           >  8:331281/1‑139 (MQ=255)
                                                                                           cGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTc                                                  <  7:123595/148‑1 (MQ=255)
                                                                                             tCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCCGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCaaa                                               <  5:90485/149‑1 (MQ=255)
                                                                                              cACCGCCCCGGCCCCCACCCCCCACCCCGCGGAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAg                                              <  4:128942/149‑1 (MQ=255)
                                                                                              cACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGc                                                                <  6:345984/131‑1 (MQ=255)
                                                                                              cACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGc                                                                >  5:345984/1‑131 (MQ=255)
                                                                                                 cGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAg                                                                          >  6:308853/1‑118 (MQ=255)
                                                                                                     cTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTca                                       <  6:26268/149‑1 (MQ=255)
                                                                                                        gCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACAt                                    >  6:166781/1‑149 (MQ=255)
                                                                                                         cccccAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATg                                   >  6:368217/1‑149 (MQ=255)
                                                                                                          ccccAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGt                                  >  7:319305/1‑149 (MQ=255)
                                                                                                                gCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAgg                             <  7:155286/149‑1 (MQ=255)
                                                                                                                       cccGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATc                      <  5:370698/149‑1 (MQ=255)
                                                                                                                       cccGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATc                      <  4:42204/149‑1 (MQ=255)
                                                                                                                              cAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCctgct               <  3:211497/149‑1 (MQ=255)
                                                                                                                              cAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCctgc                <  3:55516/148‑1 (MQ=255)
                                                                                                                                 tGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCCTGCTGGa            <  6:318565/149‑1 (MQ=255)
                                                                                                                                    gTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCCTGCTGGACGc         >  2:151163/1‑149 (MQ=255)
                                                                                                                                       ggCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCCTGCTGGACGCCTg      <  5:368217/149‑1 (MQ=255)
                                                                                                                                        gCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCCTGCTGGACGCCTgg     >  1:175524/1‑149 (MQ=255)
                                                                                                                                           tGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGTTGTATCGCCTGCTGGACGCCTggggg  >  5:347231/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                          
CCCGGCTGGAACTGATTCATACGCCTTGCTGCCACGTGCAAGGCTCCCACCACTGGATATACATGATGAGCTCAGCATTACCCGACGTTTCCGTCACCGACCTGGCCCCCAGCCTCAGCCCGCTGCAATGGGTCGGCATGCAGGGTATCGACCTGCCGGTAAGGATCCAAGAACCGACCTACCAGCGTGAGCTGCACGCCCGGGCGGATGTCCAGGTCGACCTGCCGGCACCGCATGTCAAAGGCATTCACATGTCCAGGCTGTATCGCCTGCTGGACGCCTGGGGG  >  NC_002947/3759333‑3759619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: