| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,877,151 | C→T | 12.5% | T80T (ACC→ACT) ‡ | PP_3425 → | RND family transporter MFP subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,877,151 | 0 | C | T | 12.5% | 180.0 / 14.5 | 72 | T80T (ACC→ACT) ‡ | PP_3425 | RND family transporter MFP subunit |
| Reads supporting (aligned to +/- strand): ref base C (30/33); new base T (4/5); total (34/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
CCGCTGCGCCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCG > NC_002947/3877009‑3877297 | ccGCTGCGCCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCAT‑TCACCGAAGgc > 8:142788/1‑149 (MQ=255) cGCTGCGCCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGgcg > 1:146346/1‑149 (MQ=255) gCTGCGCCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGgcgc > 8:293854/1‑149 (MQ=255) gCTGCGCCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGgcgc < 8:258020/149‑1 (MQ=255) cTGCGCCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCTGGGCGCCT‑TCGGTGAAGgcgac > 2:319000/1‑147 (MQ=255) gcCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCTGGGCGCCT‑TCGGTGAAGGCGACCTgg < 1:319000/149‑1 (MQ=255) ccGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCTGGGCGCCT‑TCGGTGAAGGCGACCTGGt < 3:310324/149‑1 (MQ=255) ccGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGt > 8:93948/1‑149 (MQ=255) ccGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAAGGCGCCT‑TCGGTGAAGgcgac < 4:228443/144‑3 (MQ=255) ccGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAAGGCGCCT‑TCGGTGAAGgcgac > 3:228443/1‑142 (MQ=255) ccGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACAGTCGAAGTGCGCCCGCGCGTCTCCGGCCAGAACGACACGGTCGACT‑TCAGCGAAGGCGCACAGGt > 6:346645/1‑149 (MQ=255) aaGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCaa < 7:73304/149‑1 (MQ=255) gTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACAGGCCGCCTCGAAGCCCCGGAGACAGTCGAAGTGCGCCCGCGGTTCTCCGGCCAGATCGAACAGGTCGCCT‑TCACCGAAGTCGCCCAGGTCAAGa > 3:225677/1‑148 (MQ=255) tAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGaa‑a < 7:179629/149‑1 (MQ=255) aGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑Ag < 5:200636/148‑1 (MQ=255) aGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑Ag < 6:114722/148‑1 (MQ=255) tgGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGAc < 2:137704/149‑1 (MQ=255) tgGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGAc < 7:93948/149‑1 (MQ=255) gCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCTGGGCGCCT‑TCGGTGAAGGCGACCTGGTc < 5:138087/135‑1 (MQ=38) gCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCTGGGCGCCT‑TCGGTGAAGGCGACCTGGTc > 6:138087/1‑135 (MQ=38) aGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACctgctg < 2:21544/149‑1 (MQ=255) ggTGATCGAACAACCGATCACCAAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACctgctg > 7:55323/1‑148 (MQ=255) aTCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCa < 8:45958/149‑1 (MQ=255) ggttgttcGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGa < 3:257266/141‑1 (MQ=255) gAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGTCACCGACGAAGTGCGCCCCCGCGTCTCCGGCCCGATCGACCACGTCGCAT‑TCGCCGAAGGCGCGCAGGTCATCGA‑AGGCTCCGTGCTGGTCCAgg > 8:335625/1‑147 (MQ=255) gAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCTT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGa < 7:142788/148‑1 (MQ=255) acaacCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCTGTCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATc < 1:79818/149‑1 (MQ=255) gATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCcgc > 3:63615/1‑149 (MQ=255) ccGACTGGGACGAGTGCACCGGCCGCCTCGAATCCCCGGAAACCTTCGAAGTGCGCCCGCGTGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTc < 6:167849/110‑1 (MQ=255) ccGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGACACCCACGAAGTGCGCCCGCGGGTCGGCGGCGCGATCGACCCGCTCCCAG‑TCACCGACGTCGCCGACGTCAAGAA‑ACGCGACCGCCTGTTCCAGATAGACCCGCGACCg > 6:213420/1‑149 (MQ=255) ccGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCg > 3:347220/1‑149 (MQ=255) ccGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGACAGAGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTc > 5:167849/1‑110 (MQ=255) aaTGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTc < 7:293854/149‑1 (MQ=255) ggACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAgg < 8:55323/149‑1 (MQ=255) aGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGaa < 2:145336/149‑1 (MQ=255) cACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTcc > 4:315445/1‑149 (MQ=255) aCCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTg < 4:183860/142‑1 (MQ=255) aCCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTg > 3:183860/1‑142 (MQ=255) ccGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCC‑TCACCGAAGGCGCCCAGGTCAAGAA‑ACGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTccgc < 6:163061/149‑1 (MQ=255) cGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCAcc < 6:272838/76‑1 (MQ=255) cGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCAcc > 5:272838/1‑76 (MQ=255) ggCCGCCTCGAAGCCCCGGAACCCCTCGAAGTGCGCCCGCGGCTCGCCGGCCAGATCGACCAGGTCGGGG‑TCCCCGAAGGCGCCCAGGGCAAGCA‑ACGCGCCCTGCAGTTCCAGCACGACCCGCGCCCTGTCCAGGCTGAAGAcctccg > 2:221526/1‑149 (MQ=255) ccgccTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCgccgcc < 3:315445/149‑1 (MQ=255) cgccTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGCCCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCt > 5:222134/1‑149 (MQ=255) gAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGTTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCAGTTCCAGGATGAATTCCGCCGCCTCGaa < 2:146346/147‑1 (MQ=255) gAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGaa < 4:88718/147‑1 (MQ=255) gAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGc > 2:115552/1‑149 (MQ=255) ccGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCg > 5:341983/1‑85 (MQ=255) ccGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCg < 6:341983/85‑1 (MQ=255) ccGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGaa > 3:3252/1‑141 (MQ=255) ccGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGaa < 4:3252/141‑1 (MQ=255) cgggcataaGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACa < 3:53087/142‑1 (MQ=255) aaGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACaggccaag > 8:325937/1‑149 (MQ=255) gTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACaggccaaggc > 8:251411/1‑149 (MQ=255) gcCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTTAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCAcc < 1:44023/149‑1 (MQ=255) cgGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGCCCCGCGCCCGTTCCAGGCGGAAGTCCGCCGCCTCGAAGCCCAACTGCAACag > 1:91652/1‑132 (MQ=255) gggTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGAGTCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATc < 4:63615/149‑1 (MQ=255) tctcCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCg > 3:319169/1‑148 (MQ=255) ccGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAgc > 2:77787/1‑149 (MQ=255) ccGGCCAGATCGACCAGGTCACCT‑TCACCGAAGGCGCCCAGGTCAAGAAGAGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAg > 1:85214/1‑149 (MQ=255) gCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATc > 4:189511/1‑140 (MQ=255) gCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATc < 3:189511/140‑1 (MQ=255) cAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGTTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCCCGCCCGTTCCAGGCTTAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCaa < 5:346645/149‑1 (MQ=255) aCCTGGGCGCCT‑TCGGTGAAGGCGACCTGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAgc < 3:112416/137‑1 (MQ=255) aCCTGGGCGCCT‑TCGGTGAAGGCGACCTGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAgc > 4:112416/1‑137 (MQ=255) aCCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGcc > 3:39553/1‑149 (MQ=255) gCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTgg < 1:77787/149‑1 (MQ=255) cT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACaggccaa < 2:178180/108‑1 (MQ=255) cT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACaggccaa > 1:178180/1‑108 (MQ=255) cT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGc > 2:211915/1‑148 (MQ=255) t‑tCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGc > 8:58799/1‑147 (MQ=255) cACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAg < 1:211915/148‑1 (MQ=255) aCCGAAGGCGCCCATGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGAGCGGCGCGATTTGCAGGCTGAATTCGGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAgc < 2:87953/148‑1 (MQ=255) aCCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAgcg < 7:251411/149‑1 (MQ=255) | CCGCTGCGCCGAAGGTAAGTGTGGCCAAGGTGATCGAACAACCGATCACCGAATGGGACGAGTTCACCGGCCGCCTCGAAGCCCCGGAAACCGTCGAAGTGCGCCCGCGGGTCTCCGGCCAGATCGACCAGGTCGCCT‑TCACCGAAGGCGCCCAGGTCAAGAA‑AGGCGACCTGCTGTTCCAGATCGACCCGCGCCCGTTCCAGGCTGAAGTCCGCCGCCTCGAAGCCCAACTGCAACAGGCCAAGGCCACCGCCATCCGCAGCGCCAACGAAGCCCGCCGTGGCGAGCG > NC_002947/3877009‑3877297 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |