| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,971,753 | C→T | 7.8% | intergenic (+136/‑244) | PP_3501 → / → PP_3502 | transposase/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,971,753 | 0 | C | T | 7.8% | 144.2 / 2.3 | 51 | intergenic (+136/‑244) | PP_3501/PP_3502 | transposase/transposase |
| Reads supporting (aligned to +/- strand): ref base C (23/24); new base T (2/2); total (25/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 | |||||||||||
CCTGCCTAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCC > NC_002947/3971609‑3971895 | cctgcctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTg < 2:38273/149‑1 (MQ=255) cctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCt > 2:246954/1‑148 (MQ=255) cctAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCt < 1:246954/148‑1 (MQ=255) aCGCAAGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGc < 6:35581/147‑1 (MQ=255) gCAAGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCgg > 2:52355/1‑149 (MQ=255) aaGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGATATTGGCTAGTAGGCCCGGct > 2:119227/1‑149 (MQ=255) aaGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGATATTGGCTAGTAGGCCCGGct > 2:115137/1‑149 (MQ=255) gggCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCgg < 2:94670/148‑1 (MQ=255) ggACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCgg < 1:3016/144‑1 (MQ=255) ggACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCgg > 2:3016/1‑144 (MQ=255) caCGCCTACTTCCTATGTTCAAAAACGCAGCTAGCCAGTGTGCGCGAGGCAATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGGGGACATTGGCTAGTAGGCCCGGCTCTTTCTCGGGTAAAc < 2:224252/148‑1 (MQ=25) gCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCg > 5:296503/1‑149 (MQ=255) cTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGc < 6:36506/149‑1 (MQ=255) ttACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCt > 6:78463/1‑149 (MQ=255) ttACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGGAGCCGCGCCAAGGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCt > 1:297107/1‑149 (MQ=255) aTGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGGATTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATgg > 1:270317/1‑148 (MQ=255) tGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGt < 6:296503/147‑1 (MQ=255) tGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAg < 5:78463/149‑1 (MQ=255) aaaaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACtt > 7:272171/1‑149 (MQ=255) aaaaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACtt < 5:101735/149‑1 (MQ=255) aaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGcc < 4:46317/107‑1 (MQ=255) aaaaGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGcc > 3:46317/1‑107 (MQ=255) cagcTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGgga < 6:10161/149‑1 (MQ=255) agcTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGggag < 8:272171/149‑1 (MQ=255) catacataGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGATATTGGCTNGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTc < 1:115137/149‑1 (MQ=255) catacataGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGATATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTc < 1:119227/149‑1 (MQ=255) catacataGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCgg > 1:307301/1‑93 (MQ=255) catacataGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCgg < 2:307301/93‑1 (MQ=255) atacataGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGcc > 8:185586/1‑78 (MQ=255) atacataGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGcc < 7:185586/78‑1 (MQ=255) cataGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGa < 2:297107/148‑1 (MQ=255) gAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTTGCTAGTAGGCCAGGATCTTTAGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGAAGGAGGGCCATAACTCGCTTCTGaatttta > 3:48/1‑143 (MQ=25) gAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACt > 2:101009/1‑134 (MQ=255) gAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACt < 1:101009/134‑1 (MQ=255) gg‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCAt < 5:191921/125‑1 (MQ=255) gg‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCAt > 6:191921/1‑125 (MQ=255) gg‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCa < 1:52355/149‑1 (MQ=255) ccGCGAATACGGTAGCCGCGACAATGGTGAACGGCTGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGa > 5:29537/1‑149 (MQ=255) ccGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTc > 1:315450/1‑128 (MQ=255) ccGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTc < 2:315450/128‑1 (MQ=255) ccGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGa > 8:267849/1‑149 (MQ=255) ccGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGa > 6:303513/1‑149 (MQ=255) ccGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGa < 3:269905/116‑1 (MQ=255) ccGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGa > 4:269905/1‑116 (MQ=255) aaTGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCcctcc > 5:111072/1‑149 (MQ=255) tGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCa < 6:224161/115‑1 (MQ=255) tGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCa > 5:224161/1‑115 (MQ=255) tGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCtt > 3:110993/1‑149 (MQ=255) aaCGGCAGTTGTACATTTGCTAGTAGGCCCGGCTCTTTAGAGGGTAAACCCGATTGTATGGTAGGACTTGAAGGGAGGATGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGATAAATCACCCCTCCTCCttt < 4:48/148‑1 (MQ=17) cGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCaa < 7:267849/149‑1 (MQ=255) gTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACAccc > 3:30674/1‑148 (MQ=255) | CCTGCCTAACTTACGCAAGGTGAGTTGGGCGGACGCTTACTTCCTATGTTCAAAAAAGCAGCTAGACAGTGTGGGCGAGTCCATACATAGGAGCGGG‑TTTACCCGCGAATACGGTAGCCGCGACAATGGTGAACGGCAGGTGGACATTGGCTAGTAGGCCCGGCTCTTTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAGGAGAAATCACCCCTCCTCCTTTCAACACCC > NC_002947/3971609‑3971895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |