Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,097,937 C→G 7.8% T251T (ACG→ACC) ‡ qor‑II ← quinone oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,097,9370CG 7.8% 160.0 / 4.1 55T251T (ACG→ACC) ‡qor‑IIquinone oxidoreductase
Reads supporting (aligned to +/- strand):  ref base C (24/25);  new base G (2/2);  total (27/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01

GCGGGAAGCATCGCCAGACCCGAGGCTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGG  >  NC_002947/4097789‑4098079
                                                                                                                                                    |                                                                                                                                              
gcGGGAAGCATCGCCAGACCCGAGGCTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGc                                                                                                                                                <  6:67669/149‑1 (MQ=255)
  gggAAGCATCGCCAGACCCGAGGCTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGt                                                                                                                                              >  7:92592/1‑149 (MQ=255)
   ggAAGCATCGCCAGACCCGAGGCTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTg                                                                                                                                             <  7:216250/149‑1 (MQ=255)
                gACCCGAGGCTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATgg                                                                                                                                <  3:53453/149‑1 (MQ=255)
                   ccGAGGCTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAg                                                                                                                             >  7:287152/1‑149 (MQ=255)
                         cTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTg                                                                                                                       <  3:259642/149‑1 (MQ=255)
                          tGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTg                                                                                                                       >  4:170137/1‑148 (MQ=255)
                                aTACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGGGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGa                                                                                                                <  2:318333/149‑1 (MQ=255)
                                 tACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAg                                                                                                               >  1:108593/1‑149 (MQ=255)
                                   ccTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGt                                                                                                             <  3:170137/149‑1 (MQ=255)
                                          cAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTgccgcc                                                                                                       >  2:196159/1‑148 (MQ=255)
                                          cAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTgccgcc                                                                                                       >  4:56527/1‑148 (MQ=255)
                                           aaCCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGCCATTGAGGTTGCCACGCTCAATGCCaatggc                                                                                                                         >  5:323404/1‑124 (MQ=38)
                                           aaCCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGCCATTGAGGTTGCCACGCTCAATGCCaatggc                                                                                                                         <  6:323404/129‑6 (MQ=38)
                                             ccGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAAc                                                                                                   >  1:353736/1‑149 (MQ=255)
                                                cTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGCGTCAGGTACAGCGAGCCATAGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGa                                                                                                 >  3:205644/1‑148 (MQ=255)
                                                    cAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATAcc                                                                                             >  1:155241/1‑148 (MQ=255)
                                                                  cgcgcTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCAcc                                                                              <  3:91103/149‑1 (MQ=255)
                                                                        gctgGTACTCCTCGACAGTGCGGGTGTGTGCTGGGAGGGATGGCCGGGTCAGGTTCAGCGTGCCTTTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAgg                                                                        <  4:205644/149‑1 (MQ=255)
                                                                         ctgGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAgg                                                                        <  8:215881/148‑1 (MQ=255)
                                                                           ggTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTg                                                                     >  1:315195/1‑149 (MQ=255)
                                                                            gTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATa                                                                                               <  7:324466/122‑1 (MQ=255)
                                                                            gTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATa                                                                                               >  8:324466/1‑122 (MQ=255)
                                                                             gacgcctcGACAGTGCGGGGGTGTGCGGCGAGCGATGGCCGGGGCAGGTACAGCGAGCCATGGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGcc                                                                   <  6:104/145‑1 (MQ=255)
                                                                              aCTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCTGAACGATACCAACAAGCCGCGCACCCTCAGGCTGcc                                                                   >  5:287614/1‑148 (MQ=255)
                                                                                  ctcGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGTGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAgg                                                                        <  4:63771/139‑1 (MQ=255)
                                                                                  ctcGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGTGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAgg                                                                        >  3:63771/1‑139 (MQ=255)
                                                                                  ctcGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGAt                                                                                                <  6:241909/115‑1 (MQ=255)
                                                                                  ctcGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGAt                                                                                                >  5:241909/1‑115 (MQ=255)
                                                                                    cGACAGGGCGGGTGTGTGCTGCGAGGGATGGCCGGGTCTGGTACAGCGAGCCATTGGCATTGTGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGTGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAg                                                            <  4:100368/149‑1 (MQ=255)
                                                                                     gACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGa                                                             <  3:56527/147‑1 (MQ=255)
                                                                                            cGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAg                                                    <  1:196159/149‑1 (MQ=255)
                                                                                                   gtgCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACAcc                                             <  2:155241/149‑1 (MQ=255)
                                                                                                         cgagcgaTGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGcc                                        <  2:353736/148‑1 (MQ=255)
                                                                                                          gagcgaTGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCCGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCa                                      >  2:111262/1‑149 (MQ=255)
                                                                                                                tGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCTGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAAt                                <  6:287614/149‑1 (MQ=255)
                                                                                                                    cGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGTACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTa                            <  1:327604/149‑1 (MQ=255)
                                                                                                                    cGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGTACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTa                            >  2:327604/1‑149 (MQ=255)
                                                                                                                    cGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCaacc                                                   >  6:127258/1‑124 (MQ=255)
                                                                                                                    cGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGc                                                   <  5:127258/126‑1 (MQ=255)
                                                                                                                        tCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTacac                         >  6:121938/1‑148 (MQ=255)
                                                                                                                            gTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACgg                    <  5:121938/149‑1 (MQ=255)
                                                                                                                            gTACAGCGAGCCATCGGCATTGAGCGTGGCAACCCCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACgg                    >  8:330281/1‑149 (MQ=255)
                                                                                                                             tACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGc                   <  8:287152/149‑1 (MQ=255)
                                                                                                                              aCAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGc                   >  5:251008/1‑148 (MQ=255)
                                                                                                                                cgCGAGCCATTCGCATTGAGCGGGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCcac                <  6:251008/148‑1 (MQ=255)
                                                                                                                                 gCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCcaca               >  3:260819/1‑149 (MQ=255)
                                                                                                                                   gAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAgg                                                                        >  7:225744/1‑90 (MQ=255)
                                                                                                                                   gAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAgg                                                                        <  8:225744/90‑1 (MQ=255)
                                                                                                                                      ccATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttg          <  4:260819/149‑1 (MQ=255)
                                                                                                                                           gacATTGAGGTTGCCACGCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggcctt     >  4:139941/3‑149 (MQ=255)
                                                                                                                                            gCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggccttg    >  6:158068/1‑149 (MQ=255)
                                                                                                                                            gCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggccttg    >  2:152717/1‑149 (MQ=255)
                                                                                                                                             cATTGAGGTTGCCACGCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggccttgg   <  3:139941/149‑1 (MQ=255)
                                                                                                                                             cATTGAGCGTGGCAACCCCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACAccttggccttgg   <  7:330281/149‑1 (MQ=255)
                                                                                                                                               ttGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTggg  >  8:197143/1‑148 (MQ=255)
                                                                                                                                                    |                                                                                                                                              
GCGGGAAGCATCGCCAGACCCGAGGCTGGACGATACCTTCGGCAACCGCTGCCAGCACATCGGCCGCGCGCTGCTGGTACTCCTCGACAGTGCGGGTGTGTGCTGCGAGCGATGGCCGGGTCAGGTACAGCGAGCCATTGGCATTGAGCGTGGCAACCTCAATGGCAGGCGGTGCACCGGAGGTGCCGCCGAACGATACCAACAAGCCGCGCACCCTCAGGCTGCCCAACGAGGCCTCAAGCGACACCTTGCCCACGCAATCGTACACTACGGCCACACCTTGGCCTTGGG  >  NC_002947/4097789‑4098079

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑