Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,133,979 | C→G | 15.4% | A351P (GCA→CCA) ‡ | PP_3638 ← | acyl‑CoA dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,133,979 | 0 | C | G | 15.4% | 147.8 / 17.1 | 58 | A351P (GCA→CCA) ‡ | PP_3638 | acyl‑CoA dehydrogenase |
Reads supporting (aligned to +/- strand): ref base C (26/23); new base G (5/4); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CACACCACTGGGGCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTGCAACTCCAGTTGTACC > NC_002947/4133831‑4134124 | cacaCCACTGGGGCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACgcctgc < 6:169870/149‑1 (MQ=255) cacTGGGGCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGc > 7:162087/1‑149 (MQ=255) acTGGGGCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCg < 8:162087/149‑1 (MQ=255) cTGGGGCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGt < 6:310231/149‑1 (MQ=255) gggCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGtt < 1:2806/147‑1 (MQ=255) gggCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTg < 7:46459/148‑1 (MQ=255) gggCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTg > 3:296844/1‑148 (MQ=255) gggCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTg > 8:46459/1‑148 (MQ=255) gCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAg < 3:193832/149‑1 (MQ=255) aGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCg < 2:361528/149‑1 (MQ=255) aGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCAGGCAGGCGTTg < 1:307240/142‑1 (MQ=255) aGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCAGGCAGGCGTTg > 2:307240/1‑142 (MQ=255) aCCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGc < 8:16141/149‑1 (MQ=255) ccTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCg < 4:294711/136‑1 (MQ=255) ccTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCg > 3:294711/1‑136 (MQ=255) cTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCAc > 6:225382/1‑149 (MQ=255) cTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGc > 8:76118/1‑149 (MQ=255) ccAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCAGGCAGGCGTTGc < 3:191527/118‑1 (MQ=255) ccAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCAGGCAGGCGTTGc > 4:191527/1‑118 (MQ=255) aGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGt > 6:168098/1‑148 (MQ=255) gCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGa < 5:225382/149‑1 (MQ=255) cAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGAt < 6:127416/149‑1 (MQ=255) cGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGtt < 3:170973/110‑1 (MQ=255) cGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGtt > 4:170973/1‑110 (MQ=255) gcgcCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTgg > 5:45097/1‑128 (MQ=255) gcgcCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTgg < 6:45097/128‑1 (MQ=255) cAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAggactg > 1:308000/1‑145 (MQ=255) cAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGcc < 2:308000/147‑1 (MQ=255) ctgctgCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCAGGCAGGCGTTg < 5:183339/89‑1 (MQ=255) ctgctgCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCAGGCAGGCGTTg > 6:183339/1‑89 (MQ=255) tgctgcCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGc > 7:190128/1‑149 (MQ=255) gcCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATc > 7:192822/1‑149 (MQ=255) ccAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATcg > 7:306472/1‑149 (MQ=255) ccaccCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAgg > 6:351858/1‑129 (MQ=255) ccaccCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAgg < 5:351858/129‑1 (MQ=255) accCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATcggcg > 2:194072/1‑146 (MQ=255) accCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATcggcg < 1:194072/146‑1 (MQ=255) aCGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑ccc > 7:199430/1‑149 (MQ=255) tAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCg < 8:190128/149‑1 (MQ=255) ccAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTAtt < 8:306472/149‑1 (MQ=255) ggATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCaga < 7:300206/149‑1 (MQ=255) gATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCagag < 1:188227/149‑1 (MQ=255) tGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAgg > 3:109416/1‑148 (MQ=255) cACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCGATGGCgggagtcg < 8:73545/124‑6 (MQ=255) cACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCGATGGCgggagtcg > 7:73545/1‑119 (MQ=255) aCGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGc > 1:190047/1‑149 (MQ=255) aCGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGc > 2:134026/1‑149 (MQ=255) cAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTgccgc > 5:198812/1‑148 (MQ=255) aaCACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTg < 1:109743/149‑1 (MQ=255) acacCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTgg > 1:333512/1‑149 (MQ=255) cacCNCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATcggcg > 5:347016/1‑101 (MQ=255) cacCGCTCTCATGCAACGCCTGCCTGGCGTTTCAGTTCTTCGCGCA‑ATTGCACCAGGATGGGCGTGACGATCGTCAAGAAGGCCGACTCCCGCCATcggcg < 6:347016/101‑1 (MQ=255) acCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCAGCAGGCTGGGCGTGACGATCGGCACGAGGGCCGACTCCCGCCATCGGCGGGCAAG‑CCCTTCGCGGTATTCGCAGAGGTAAGCCTTGCCGCCGCTGGcc > 2:116239/1‑149 (MQ=255) cgcgCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTg < 8:199430/149‑1 (MQ=255) tCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTGCAACt > 1:160864/1‑149 (MQ=255) ctGCAACGCCAGGCAGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTGCAACTc > 4:144855/2‑148 (MQ=255) gCAACGCCAGGCAGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAAGCCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTg < 1:254966/141‑1 (MQ=255) gCAACGCCAGGCAGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTg > 2:254966/1‑140 (MQ=255) aaCGCCTGCCTGGCGTTGCAGTTCGGCGCGCAGATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTGCAACTCCAGt > 1:43108/1‑149 (MQ=255) ctgcctgGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTGCAACTCCAGTTGTAcc > 4:346467/1‑149 (MQ=255) | CACACCACTGGGGCCAAGGATGCTCACGACCTCACCTGGTGCCAGCTGCAGGTCGAACTGCGCCAGCACCTGCTGCCAACCACCCTCACGCGGGTAGCCCAAGCGGATGTCACGGGCCTCCAGCAACACCGCGCTCATGCAACGCCTGCCTGGCGTTGCAGTTCGGCGCGCA‑ATTGCACCAGGCTGGGCGTGACGATCGGCACGAAGGCCGACTCCCGCCATCGGCGGGCAAA‑CCCTTCGCCGTATTCGCAGAGGTAAGCCTTGCCGCCACTGGCCTGCAACTCCAGTTGTACC > NC_002947/4133831‑4134124 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |