Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,164,719 | C→T | 7.4% | intergenic (+69/+48) | PP_3665 → / ← PP_3666 | AraC family transcriptional regulator/MHS family metabolite MFS transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,164,719 | 0 | C | T | 7.4% | 157.1 / 2.3 | 54 | intergenic (+69/+48) | PP_3665/PP_3666 | AraC family transcriptional regulator/MHS family metabolite MFS transporter |
Reads supporting (aligned to +/- strand): ref base C (26/24); new base T (2/2); total (28/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 |
CTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTGCCGGGGCCAGCTTG > NC_002947/4164571‑4164866 | cggcgcATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTc < 8:280033/147‑1 (MQ=255) cgcATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTcc < 1:346853/147‑1 (MQ=255) cgcATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGc > 1:38720/1‑149 (MQ=255) tttttCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCcaca < 2:213914/149‑1 (MQ=255) aaGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGtt < 4:255505/149‑1 (MQ=255) agTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTa < 1:87271/149‑1 (MQ=255) gTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAg < 6:305268/149‑1 (MQ=255) ttATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAg < 5:343198/148‑1 (MQ=255) ttATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGAGC‑CTACACGCACATCGGTGGTCAGCCACCGGCCGTTGTAg > 6:343198/1‑148 (MQ=255) ccGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGt > 8:74756/1‑148 (MQ=255) ccGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGt > 5:177330/1‑148 (MQ=255) ggTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTgag < 7:74756/149‑1 (MQ=255) gTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTgag > 7:127433/1‑148 (MQ=255) ttcttcGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGTCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGTCGCGTGagaa < 6:177330/149‑1 (MQ=255) ttcttcGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGagaa < 2:38720/149‑1 (MQ=255) ttcGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTTCGCCACAGGCCGTTGTAGGCGCGTGagaag > 7:140943/1‑147 (MQ=255) ttcGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTTCGCCACAGGCCGTTGTAGGCGCGTGagaag > 7:136235/1‑147 (MQ=255) tCGCCTTTAGGGGAGCGTCGGCAGGCCTCTCTCCACTGAGGTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCTC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTg < 7:308983/147‑1 (MQ=255) tAGGGGAGCGGCGGCAGGCCTCTCTCAACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAAc > 1:9754/1‑149 (MQ=255) gAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAgg < 5:62801/105‑1 (MQ=255) gAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAgg > 6:62801/1‑105 (MQ=255) gAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATc > 4:32395/1‑149 (MQ=255) aGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACAGCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCt > 7:189585/1‑149 (MQ=255) gcggcAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTc > 4:236808/1‑147 (MQ=255) gCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCcgc > 2:2026/1‑149 (MQ=255) ctctctCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGc < 3:338388/144‑1 (MQ=255) ctctctCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGc > 4:338388/1‑144 (MQ=255) tcCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTgc < 7:291297/146‑1 (MQ=255) cACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGt < 3:32395/149‑1 (MQ=255) aGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTccc < 2:173495/149‑1 (MQ=255) aGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTccc < 3:236808/149‑1 (MQ=255) aGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACAt > 8:325970/1‑147 (MQ=255) ttGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATg > 2:257432/1‑149 (MQ=255) gCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGc < 8:127433/148‑1 (MQ=255) cTGGCCTCTTCGCGGGCAAGCCCGCGCTCTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAg > 1:197823/1‑149 (MQ=255) cTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAgc > 4:2712/1‑149 (MQ=255) gCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAgcgc > 7:72314/1‑148 (MQ=255) gCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAgcg < 8:189585/147‑1 (MQ=255) tgtaggcgcgGGCTTGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGcca > 1:75907/7‑149 (MQ=255) ctctTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGccac < 1:2026/149‑1 (MQ=255) cgcgGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTTCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGccacca < 8:140943/146‑1 (MQ=255) cgcgGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGt < 1:257432/148‑1 (MQ=255) cgcgGGCAAGCACGCGC‑CTACACGCACATCGGTGGTTCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGccacca < 8:136235/146‑1 (MQ=255) gggCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCCTGGCCACCAGCGCCACCAGtgctg > 6:257935/1‑149 (MQ=255) gCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGaca > 6:74793/1‑115 (MQ=255) gCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGaca < 5:74793/115‑1 (MQ=255) gCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTgcc > 3:87586/1‑149 (MQ=255) cccGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAg > 5:307051/1‑149 (MQ=255) cccGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAg > 7:47245/1‑149 (MQ=255) gcgc‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGc > 2:167398/1‑147 (MQ=255) gcgc‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCaa < 2:75907/149‑1 (MQ=255) cTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTAt > 4:225322/1‑149 (MQ=255) cacGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATc < 3:2712/147‑1 (MQ=255) acGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTg > 4:213165/1‑149 (MQ=255) aTCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTGCCgggg < 4:87586/149‑1 (MQ=255) tCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTGCCGGGGCCAGCTtg < 3:213165/149‑1 (MQ=255) | CTGCGCATTTTTCCAAGAGTTATAGCCGGTTCTTCGGGCTGTCGCCTTTAGGGGAGCGGCGGCAGGCCTCTCTCCACTGAGTTGGGTCAGGTATTGGCATTGCTGGCCTCTTCGCGGGCAAGCCCGCGC‑CTACACGCACATCGGTGGTCCGCCACAGGCCGTTGTAGGCGCGTGAGAAGAAGCCAGTGCAGGTCAACTAATCTTCAAGGGCCGCGTGCGCCGTCTCCCGACACATCAGCATGGCCACCAGCGCCACCAGTGCTGCCGCCAGCAAGTATCCTGCCGGGGCCAGCTTG > NC_002947/4164571‑4164866 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |