Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,244,992 | A→C | 8.9% | I10S (ATC→AGC) | aruH ← | arginine‑‑pyruvate transaminase AruH |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,244,992 | 0 | A | C | 8.9% | 133.5 / 4.3 | 45 | I10S (ATC→AGC) | aruH | arginine‑‑pyruvate transaminase AruH |
Reads supporting (aligned to +/- strand): ref base A (18/23); new base C (2/2); total (20/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01 |
CGCAGGCTGTCGATGGCCGCCTCGACGATAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGATTTCTTCCATCTCGGCCTGG > NC_002947/4244845‑4245135 | cgcAGGCTGTCGATGGCCGCCTCGACGATAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGAt < 4:298245/149‑1 (MQ=255) gCTGTCGATGGCCGCCTCGACGATAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGtt > 6:365617/1‑149 (MQ=255) tGTCGATGGCCGCCTCGACGATAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTgg > 5:16645/1‑149 (MQ=255) tCGATGGCCGCCTCGACGATAGGCGCGGGAGTGTCGAAGTCCGGGGCACCCACCGACAGCACCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTgg < 3:50207/147‑1 (MQ=255) gATGGCCGCCTCGACGATAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGt > 6:68370/1‑147 (MQ=255) gaTAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCa > 5:49591/1‑149 (MQ=255) tAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCCGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATg < 5:150335/149‑1 (MQ=255) ggCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATgg < 1:271791/148‑1 (MQ=255) gcgcGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGc > 1:198853/1‑148 (MQ=255) gcgGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAAt < 6:49591/149‑1 (MQ=255) gAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTcc < 5:365617/149‑1 (MQ=255) aGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCt < 6:16645/149‑1 (MQ=255) gtgtCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCtt < 6:264748/149‑1 (MQ=255) tgtCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCttt < 3:327346/149‑1 (MQ=255) aGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTCGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATgg < 8:221784/149‑1 (MQ=255) cGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCATCGCCGGCGACGGCGCTGCgg < 1:29146/103‑2 (MQ=255) cGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCATCGCCGGCGACGGCGCTGCgg > 2:29146/1‑102 (MQ=255) cGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAAt > 2:115242/1‑149 (MQ=255) ggTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAAttt < 4:351310/149‑1 (MQ=255) accGACAGCAGGAGGCTGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTTTGTGAGCTTCGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTcgac < 8:154440/149‑1 (MQ=255) accGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTcgac > 3:260676/1‑149 (MQ=255) gcagGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAAttt < 5:259544/131‑1 (MQ=255) gcagGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAAttt > 6:259544/1‑131 (MQ=255) cctCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGccc > 6:174777/1‑149 (MQ=255) ctCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTcgac < 7:150672/123‑1 (MQ=255) ctCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTcgac > 8:150672/1‑123 (MQ=255) cAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGTTTGGCGTAGCCCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAAt < 1:115242/149‑1 (MQ=255) cAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAAt < 5:174777/149‑1 (MQ=255) cAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAAt > 7:321249/1‑149 (MQ=255) aGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGACCCATACGGTGTACAAATc > 8:92240/1‑149 (MQ=255) gggCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCg < 1:141644/149‑1 (MQ=255) gcgGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGa < 8:321249/149‑1 (MQ=255) gTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGc > 2:44371/1‑148 (MQ=255) gTGGATTTCCAAGGCAGCAGCTCCGTCGCCTTCTATTCGTTGGGTTAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATTGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAAc < 5:68370/148‑1 (MQ=255) gATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGt > 2:49872/1‑89 (MQ=255) gATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGt < 1:49872/89‑1 (MQ=255) aTGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGcc > 7:83988/1‑149 (MQ=255) ccaacGCATCGCCGGCGACGGCGCTGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGAtt > 8:76647/5‑149 (MQ=255) cGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGATttctt > 7:290013/1‑149 (MQ=255) gCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGAttt > 6:316169/1‑145 (MQ=255) gCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGAttt < 5:316169/145‑1 (MQ=255) tCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTAGAGGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGAAACGAGCCGTTTATTTATTCCATCTCgga > 5:10360/1‑148 (MQ=255) gCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGATTTCTTCCATCTCGGCCt < 8:83988/149‑1 (MQ=255) cGGCGCTGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGATTTCTTCCATCTCGGCCTgg < 7:76647/149‑1 (MQ=255) cGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGATTTCTTCCATCTCGGCCTgg < 2:198853/149‑1 (MQ=255) | CGCAGGCTGTCGATGGCCGCCTCGACGATAGGCGCGGGAGTGTCGAAGTCCGGGTCACCCACCGACAGCAGCAGGATGTCCTTGTCCTCAGCCTGCAGCGCCAGGGCGCGGTAGTGGATGTCCCAGGCCGCAGCGCCGTCGCCGGCGATGCGTTGGGTGAGCTTGGCGTAGCGCATGGCAATCTCCTTTCAATGGCAATTTCAGTCGACGAGTATCTTCGGGTTGGAATTGCCCCATACGGTGTACAAATCGGCGAGCAACGCGCCGTTGATTTCTTCCATCTCGGCCTGG > NC_002947/4244845‑4245135 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |