Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,246,185 C→G 13.8% M30I (ATG→ATC alr ← alanine racemase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,246,1850CG13.8% 128.3 / 10.9 56M30I (ATG→ATCalralanine racemase
Reads supporting (aligned to +/- strand):  ref base C (19/29);  new base G (2/6);  total (21/35)
Fisher's exact test for biased strand distribution p-value = 6.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

ATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTAACAGACGCAGGTGT  >  NC_002947/4246038‑4246325
                                                                                                                                                   |                                                                                                                                              
aTAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCa                                                                                                                                               >  8:19512/1‑149 (MQ=255)
  aGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGTTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATc                                                                                                                                             >  6:184911/1‑149 (MQ=255)
    gCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGa                                                                                                                                           >  8:147847/1‑149 (MQ=255)
    gCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGa                                                                                                                                           >  8:143115/1‑149 (MQ=255)
          gCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGTCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCGATGGACAACgg                                                                                                                                    <  1:171240/149‑1 (MQ=255)
            cTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCGATGGACAACggca                                                                                                                                  <  1:139705/149‑3 (MQ=255)
            cTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTACCGTTGTCGATGGACAACggca                                                                                                                                  <  3:76557/149‑3 (MQ=255)
             ttGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACggtgg                                                                                                                                 >  2:38363/1‑149 (MQ=255)
                aGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGc                                                                                                                              <  8:150757/149‑1 (MQ=255)
                aGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGc                                                                                                                              <  5:20480/149‑1 (MQ=255)
                 gCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGcc                                                                                                                             <  7:41475/149‑1 (MQ=255)
                  cACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTTCAGGGCGCTGGCGCTGACTTAGCCCCAAGCATTGCAGTTTTTGACCGGCAGGGTGTTGGTTCCCTTGTCCATAGACAACGGTTGTGCCg                                                                                                                            >  1:98283/1‑149 (MQ=255)
                   aCGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGc                                                                                                                           <  7:19512/149‑1 (MQ=255)
                            aGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAgggg                                                                                                                  >  1:342601/1‑149 (MQ=255)
                              cTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAgggggg                                                                                                               <  3:92400/149‑1 (MQ=255)
                                 ggACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGTTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGc                                                                                                              <  5:184911/147‑1 (MQ=255)
                                       gCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCg                                                                                                       <  5:117094/148‑1 (MQ=255)
                                       gCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGCGGTGCCGCATACAGGGGGGCCTGTcc                                                                                                        <  8:21059/147‑1 (MQ=255)
                                        ccGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACCGGTGGTGCCGCATACAGGGGGGCCTGTCCg                                                                                                       <  1:38363/148‑1 (MQ=255)
                                          ggCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGa                                                                                                   >  8:259101/1‑149 (MQ=255)
                                                cTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGaa                                                                                             <  3:6371/149‑1 (MQ=255)
                                                   ggCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAg                                                                                            <  2:98283/147‑1 (MQ=255)
                                                         cAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCGATCGACAACGGTGGTGcc                                                                                                                             <  4:230288/109‑1 (MQ=255)
                                                         cAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGcc                                                                                                                             >  3:230288/1‑109 (MQ=255)
                                                         cAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAg                                                                                      <  5:355803/147‑1 (MQ=255)
                                                                cGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGc                                                                             <  7:259101/149‑1 (MQ=255)
                                                                        gtgCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAggg                                                                     >  3:165754/1‑149 (MQ=255)
                                                                        gtgCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAgg                                                                      <  7:147847/148‑1 (MQ=255)
                                                                        gtgCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAgg                                                                      <  7:271403/148‑1 (MQ=255)
                                                                        gtgCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAgg                                                                      <  7:143115/148‑1 (MQ=255)
                                                                           ctgcAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTAc                                                                  >  2:58145/1‑149 (MQ=255)
                                                                            tgcAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGt                                                                                           >  2:39866/1‑123 (MQ=255)
                                                                            tgcAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGt                                                                                           <  1:39866/123‑1 (MQ=255)
                                                                                    gctggcgctgACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGCGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAg                                                          <  1:98968/149‑1 (MQ=255)
                                                                                      tggcgctgACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCAGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCAAGGGATGCAGCCAGAAGGGTACGTCGAAAtgg                                                        >  4:272116/1‑148 (MQ=255)
                                                                                        gcgctgACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGGCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCAt                                                     <  1:58145/149‑1 (MQ=255)
                                                                                              aCTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGAt                                               <  2:342601/149‑1 (MQ=255)
                                                                                                   gACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTTGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTc                                          <  7:199857/149‑1 (MQ=255)
                                                                                                   gACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTc                                          <  4:165754/149‑1 (MQ=255)
                                                                                                        aGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCgtgt                                      >  7:195160/1‑148 (MQ=255)
                                                                                                               gCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTc                                          >  7:121358/1‑137 (MQ=255)
                                                                                                               gCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTc                                          <  8:121358/137‑1 (MQ=255)
                                                                                                               gCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCg                              >  1:183941/1‑149 (MQ=255)
                                                                                                                 tGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTAc                                                                  <  7:227126/111‑1 (MQ=255)
                                                                                                                 tGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTAc                                                                  >  8:227126/1‑111 (MQ=255)
                                                                                                                        cACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTgcgc                      <  2:183941/148‑1 (MQ=255)
                                                                                                                           ggTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCACAAGGGTACGGCGATAGGGCATGGTGATTACTCGTGTTCTTTTCGTAGTGCGCGCCt                  >  7:281243/1‑149 (MQ=255)
                                                                                                                             tCAGGGTGTTGGTGCCGTTGTACATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGCTCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTa                <  8:283822/149‑1 (MQ=255)
                                                                                                                               aGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTTCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTAAc              <  3:272116/149‑1 (MQ=255)
                                                                                                                                gggTGGTGGTGCCGTTGTCGATCGTCAACGGTGGTGCCGCATACAGGGGGGGCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGTGCATTGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTAAc              <  8:281243/148‑1 (MQ=255)
                                                                                                                                        gTGCCTGTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGGCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTAACAGACGCAg      <  8:195160/148‑1 (MQ=255)
                                                                                                                                          gCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTAACAGACGCAGgt    >  5:280961/1‑148 (MQ=255)
                                                                                                                                          gCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTAACAGACGCAGgt    <  6:280961/148‑1 (MQ=255)
                                                                                                                                          accGTTGTCGATGGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTc                               <  4:228904/120‑1 (MQ=255)
                                                                                                                                          accGTTGTCGATGGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTc                               >  3:228904/2‑121 (MQ=255)
                                                                                                                                           ccGTTGTCGATGGACAACCGTGGTGCAGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGCATGCAGCAAGAAGGGTACGGCGAAAGGGCATGGTGATTAGTCGTGTTCTTGTCGAAGTGCGCTCATTAACAGCCGCATgtgt  >  4:190968/1‑149 (MQ=255)
                                                                                                                                                   |                                                                                                                                              
ATAGGCATCGGCCTTGAGCACGGCGCACAGCTTGGACTTGCCGGCCAGCTCGGCCTGCAGCGTGCGGATGTTGTGCTGCAGGGCGCTGGCGCTGACTTCGACCCAGGCATTGCTGTTTTGCACGGTCAGGGTGTTGGTGCCGTTGTCCATCGACAACGGTGGTGCCGCATACAGGGGGGCCTGTCCGGTGATCAGAAGTGCCAGGGATGCAGCCAGAAGGGTACGGCGAAAGGGCATGGTGATTACTCGTGTTCTTGTCGTAGTGCGCGCCTTAACAGACGCAGGTGT  >  NC_002947/4246038‑4246325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: