Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,360,769 | A→G | 8.4% | I118T (ATC→ACC) ‡ | PP_3835 ← | two‑component system sensor histidine kinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,360,769 | 0 | A | G | 8.4% | 161.4 / 4.1 | 59 | I118T (ATC→ACC) ‡ | PP_3835 | two‑component system sensor histidine kinase |
Reads supporting (aligned to +/- strand): ref base A (26/28); new base G (3/2); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTTGAAGTCGTGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCTCAGGGCGGCCATCCGCA > NC_002947/4360624‑4360912 | gttgAAGTCGTGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCt > 7:322194/1‑149 (MQ=255) gAAGTCGTGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGc > 5:50709/1‑149 (MQ=255) tCGTGCGCCAGACGACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATTTCACGTGTCACCTTGGCCAGATCATTGGCCTGGCCaag < 1:93478/149‑3 (MQ=255) gTGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACttt > 1:183263/1‑149 (MQ=255) gTGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACttt > 1:189155/1‑149 (MQ=255) tGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCTCTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGATCATTGGCCTGGCCaag < 6:334895/146‑3 (MQ=255) tGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGATCATTGGCCTGGCCaag > 5:334895/1‑144 (MQ=255) gcgcCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTtca > 2:127327/1‑149 (MQ=255) gcCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTtcatc < 6:165871/149‑1 (MQ=255) cAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCAc < 6:50709/149‑1 (MQ=255) caccGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTgg < 5:367495/131‑1 (MQ=255) caccGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTgg > 6:367495/1‑131 (MQ=255) caccGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGAt > 6:61419/1‑148 (MQ=255) accGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATca > 5:84643/1‑149 (MQ=255) aaCTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCa < 1:127327/148‑1 (MQ=255) aaCTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAg > 2:318671/1‑149 (MQ=255) cGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTgccgc > 1:334207/1‑148 (MQ=255) gCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGc > 7:180372/1‑149 (MQ=255) cTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGc < 2:334207/148‑1 (MQ=255) cTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGc < 5:61419/148‑1 (MQ=255) tGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACtt < 3:30362/105‑1 (MQ=255) tGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACtt > 4:30362/1‑105 (MQ=255) gcCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGcc > 2:33043/1‑149 (MQ=255) gcCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGcc > 3:102096/1‑149 (MQ=255) cTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGt > 8:281966/1‑149 (MQ=255) aCAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTg < 1:318671/149‑1 (MQ=255) aCAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTg < 1:8071/149‑1 (MQ=255) cAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCTCATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTgc < 6:84643/149‑1 (MQ=255) aGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTgcg < 1:2810/149‑1 (MQ=255) aGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTgcg > 7:186279/1‑149 (MQ=255) gctgctGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTgc < 2:189155/149‑1 (MQ=255) gctgctGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTgc < 2:183263/149‑1 (MQ=255) ctgcGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTGCTTGCGCACCCGCCAGCCTTCGTCCTgcgc < 1:33043/147‑1 (MQ=255) ctgcGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTgcgt < 7:281966/147‑2 (MQ=255) ctgcGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTgcgc < 4:102096/147‑1 (MQ=255) tgaccGTCGCGAGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCcaca > 1:177646/4‑149 (MQ=255) cgcCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCacac < 6:214520/149‑1 (MQ=255) ccGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCt > 6:190039/1‑149 (MQ=255) tctcGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGc < 3:20595/149‑1 (MQ=255) cgcgACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTc > 2:222989/1‑148 (MQ=255) cgACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAg > 6:16630/1‑149 (MQ=255) gACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAgc < 1:222989/149‑1 (MQ=255) gTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCt < 8:322194/149‑1 (MQ=255) aGTGATATCACGTGTCACCTTGGCCAGTCCAATGATCTCTCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTgg < 8:180372/148‑1 (MQ=255) tGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGc > 6:163017/1‑134 (MQ=255) tGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGc < 5:163017/134‑1 (MQ=255) atatCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGTGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCAcag > 3:235161/1‑149 (MQ=255) tatCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCa < 2:87320/106‑1 (MQ=255) tatCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCa > 1:87320/1‑106 (MQ=255) aCGTGTCACCTTGGCCAGGCCAATGATCTGTCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGTCACAGCAGAc < 2:23456/149‑1 (MQ=255) aCGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGAc > 4:5632/1‑149 (MQ=255) aCGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGAc > 2:117332/1‑149 (MQ=255) aCGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGAc < 8:14202/149‑1 (MQ=255) gtCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCTc < 8:186279/149‑1 (MQ=255) atgaaagtGGCCAGATCATTGGCCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCt > 8:270535/8‑148 (MQ=255) tCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCTCa < 6:26530/149‑1 (MQ=255) gaaagtGGCCAGATCATTGGCCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCTCAg > 2:352738/6‑149 (MQ=255) gccaATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCTCAGGGCGGCCATCCg > 1:96918/1‑149 (MQ=255) caATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGTGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCTCAGGGCGGCCATCCGca < 4:235161/149‑1 (MQ=255) | GTTGAAGTCGTGCGCCAGACCACCGGTCAACTGGCCGAGGGCTTCAAGCTTCTGCGCCTGGAACAGCTGGGCGCGCACTGCGTCGAGCTGCTGCGCCGTCTCGCGACGGTCAGTGATATCACGTGTCACCTTGGCCAGGCCAATGATCTGGCCACTTTCATCACGGATCACATCCAGTGCCGCCAAGGCCCAGAACTGCGTGCCGTCCTTGCGCACCCGCCAGCCTTCGTCCTGCGCCACACCTTGCTCCAGCGCCTGGCACAGCAGACGCTCAGGGCGGCCATCCGCA > NC_002947/4360624‑4360912 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |