Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,690,931 | C→T | 6.6% | A22V (GCA→GTA) | PP_4151 → | excisionase domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,690,931 | 0 | C | T | 6.6% | 176.0 / 2.2 | 60 | A22V (GCA→GTA) | PP_4151 | excisionase domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base C (32/24); new base T (2/2); total (34/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.18e-01 |
GCGATTTGCGAATATTTCGAATATAACTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAATTCTCA > NC_002947/4690784‑4691071 | gCGATTTGCGAATATTTCGAATATAACTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGc < 4:80297/148‑1 (MQ=255) gAATATTTCGAATATAACTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGt < 6:333635/147‑1 (MQ=255) gAATATTTCGAATATAACTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGt > 5:333635/1‑147 (MQ=255) gAATATTTCGAATATAACTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTc > 8:329223/1‑148 (MQ=255) aaTATTTCGAATATAACTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCaa < 5:144491/149‑1 (MQ=255) cTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCAAGTCAAGCCGCACGCTGGCAGc > 6:140533/1‑149 (MQ=255) gCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGa > 6:255244/1‑149 (MQ=255) gCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGa < 5:255244/149‑1 (MQ=255) cTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGa > 4:239883/1‑148 (MQ=255) aTCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCa < 1:180083/149‑1 (MQ=255) cacaGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATAccc > 6:239370/1‑148 (MQ=255) cacaGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATAccc > 5:75902/1‑148 (MQ=255) gCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACgg < 1:136938/149‑1 (MQ=255) cGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCCACGGATc > 8:304941/1‑148 (MQ=255) cGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATc > 1:44042/1‑148 (MQ=255) cGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATc > 4:147357/1‑148 (MQ=255) cAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGTAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATAccc > 8:152335/1‑138 (MQ=255) cAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGTAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATAccc < 7:152335/138‑1 (MQ=255) cAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGTAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATAccc < 7:157060/138‑1 (MQ=255) cAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGTAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATAccc > 8:157060/1‑138 (MQ=255) cAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGaa < 7:304941/149‑1 (MQ=255) gATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGc > 5:277578/1‑148 (MQ=255) cGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAAc > 1:23842/1‑148 (MQ=255) gCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGa < 6:98708/149‑1 (MQ=255) ggAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGaa > 6:256022/1‑148 (MQ=255) aTGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAAc < 7:240529/121‑1 (MQ=255) aTGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCAGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCATAAACCAAAc > 8:240529/1‑121 (MQ=255) tGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCa < 6:277578/148‑1 (MQ=255) cATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAgcgc > 5:121486/1‑148 (MQ=255) aTGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAgcgc > 7:131440/1‑147 (MQ=255) tGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAg < 7:329223/149‑1 (MQ=255) ccaccGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTAAACGAGGTAAATCAGCGCCAGgtt > 8:148783/1‑149 (MQ=255) caccGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGgtt < 8:282753/148‑1 (MQ=255) caccGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGgtt > 7:282753/1‑148 (MQ=255) accGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGa < 6:92381/91‑1 (MQ=255) accGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGgttgt < 5:46489/149‑1 (MQ=255) gCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAATTCAGCGCAAGGttgttg > 8:128598/1‑148 (MQ=255) gCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAgtattttg > 8:123586/1‑141 (MQ=255) ccAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGaa < 2:307034/149‑1 (MQ=255) ccAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGaa < 2:44042/149‑1 (MQ=255) cAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGa > 2:300605/1‑96 (MQ=255) ccTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGc > 3:166183/1‑113 (MQ=255) ccTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGc < 4:166183/113‑1 (MQ=255) ccTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTAc < 3:239883/149‑1 (MQ=255) ccTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCAAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTAc < 5:140533/149‑1 (MQ=255) tctAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTAc > 3:129051/1‑149 (MQ=255) tGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTGCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGTAAAATCAGCTCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTa > 7:337486/1‑148 (MQ=255) tGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTAt > 5:329844/1‑149 (MQ=255) tGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTAt > 5:182659/1‑149 (MQ=255) gACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTAtt > 6:305779/1‑149 (MQ=255) aCGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTAtt < 6:121486/148‑1 (MQ=255) gagaAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCgg > 7:213473/1‑149 (MQ=255) aaagaaaTTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCg > 5:59597/1‑148 (MQ=255) aaagaaaTTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTACTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCAAGGTTGATGAAGTACCTACTTTCGACCTACGCCTATTCGGCg > 4:101984/1‑148 (MQ=255) agaaaTTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGaaa > 3:59258/1‑149 (MQ=255) gaaaTTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAAt > 5:60209/1‑149 (MQ=255) aTTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAATtct < 5:256022/149‑1 (MQ=255) ttGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAATtctc < 6:59597/149‑1 (MQ=255) gCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAATTCTCa < 5:239370/148‑1 (MQ=255) gCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAATTCTCa < 3:147357/148‑1 (MQ=255) gCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAATTCTCa < 4:59258/148‑1 (MQ=255) | GCGATTTGCGAATATTTCGAATATAACTCGAACTCAGGCTGTTGCATCGTCGCCACAGCCCCGCAATCGATACCGCTCTGGAGATGCCCATGACCACCGCCAACCTCTCTAGCCATGTGCTTCCTGACGAGAAAGAAATTGCCGTGGCAGTCGAGTCAAGCCGCACGCTGGCAGCGTTCCTCTCGACAAAATCAGATACCCAACGGATCGAACTGCTCAACGAGGAAAATCAGCGCCAGGTTGTTGAAGTACCTACTTTCGCCCTACGCCTATTCGGCGAAATTCTCA > NC_002947/4690784‑4691071 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |