Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,807,246 | T→C | 7.1% | K216E (AAG→GAG) | PP_4234 ← | bifunctional aldehyde oxidase/xanthine dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,807,246 | 0 | T | C | 7.1% | 159.9 / 2.3 | 56 | K216E (AAG→GAG) | PP_4234 | bifunctional aldehyde oxidase/xanthine dehydrogenase |
Reads supporting (aligned to +/- strand): ref base T (27/25); new base C (2/2); total (29/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01 |
GCCAGTCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTG > NC_002947/4807102‑4807393 | gccagTCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTCGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAgg > 4:236274/1‑149 (MQ=255) ccagTCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGc > 8:142273/1‑149 (MQ=255) tCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCAGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGaa > 5:308396/1‑149 (MQ=255) cgggcgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAAc > 2:12530/1‑149 (MQ=255) gggcgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGaa < 5:17442/147‑1 (MQ=255) gggcgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGaa < 3:130839/147‑1 (MQ=255) gcgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTCGCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTCCAGCCTGAAGAACTc < 1:89089/149‑1 (MQ=255) cgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCAt < 2:98259/149‑1 (MQ=255) gTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCAtcgt > 6:228143/1‑149 (MQ=255) aGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGaa > 1:158386/1‑149 (MQ=255) tgctCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACgg > 6:220326/1‑149 (MQ=255) ctCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACgg < 7:57598/147‑1 (MQ=255) ccATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGgcg > 5:349674/1‑149 (MQ=255) aTGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCa < 3:116799/112‑1 (MQ=255) aTGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCa > 4:116799/1‑112 (MQ=255) gCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCacccaccc < 1:12530/148‑1 (MQ=255) gCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCg > 2:166993/1‑149 (MQ=255) gCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCg > 3:93853/1‑149 (MQ=255) gTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCa < 2:358175/149‑1 (MQ=255) gTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCa > 6:324705/1‑149 (MQ=255) aacaacCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTCCAGCCTGAAGAACTccat < 4:267979/113‑4 (MQ=255) aacaacCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTCCAGCCTGAAGAACTccat > 3:267979/1‑110 (MQ=255) acaacCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGccacccac < 5:215968/139‑1 (MQ=255) acaacCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGccacccac > 6:215968/1‑139 (MQ=255) aacCCCTGCTCGGTCAGGTCGCCGTGCTGGGTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCg < 6:234834/149‑1 (MQ=255) cccTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGaa < 6:308396/149‑1 (MQ=255) cTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTg < 5:228143/148‑1 (MQ=255) tCGGTCATGTCGCCGTCCTGTTAGCGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGATTGGTGGGGAACAGCATGGAGGTCTTCAGGCTGGAGAAGTCATCGTCGTCGAACGGCGTGGCGCCACCCTCCCGCACGAAGCGGAAGCTGc > 6:62323/1‑148 (MQ=255) tCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCAACCACCCGCACGAAGCGGAAGCTGc > 3:49277/1‑148 (MQ=255) aGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAgg < 4:93853/149‑1 (MQ=255) aGGTAGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCTCACGAAGCGGAAGAAGCCATAAgg > 8:126538/1‑149 (MQ=255) tCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTc < 1:166993/149‑1 (MQ=255) ccGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCAtc < 6:248504/89‑1 (MQ=255) ccGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCAtc > 5:248504/1‑89 (MQ=255) tGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTg < 3:236274/149‑1 (MQ=255) ggTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTa > 6:290097/1‑148 (MQ=255) gTTGGGCTGCTTCGACCACACCGGCTT‑GCGNGTTGAGAATGGTGGGGAACAGCATGGAGTTGTTCAGGCTGGAGAACTCTTCGTCGTCGACCGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTa > 1:32592/1‑148 (MQ=255) tGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAgc > 5:5372/1‑149 (MQ=255) ggCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGATCGGCGTGGCGCCGCCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAgcgg > 6:352494/1‑149 (MQ=255) ctTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGgcgc < 6:349674/147‑1 (MQ=255) gACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTggg < 5:220326/148‑1 (MQ=255) gTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGc < 5:160582/98‑1 (MQ=255) gTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGc > 6:160582/1‑98 (MQ=255) agaATTGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGTAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCctgct < 7:126538/148‑1 (MQ=255) agaATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCctgct > 3:134785/1‑148 (MQ=255) gaATGGTGGGGAACAGCATGTAGTTCTTCAGGATGGAGAAGTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGa < 2:158386/149‑1 (MQ=255) gggAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCgg > 8:2288/1‑78 (MQ=255) gggAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCgg < 7:2288/78‑1 (MQ=255) aCAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGc < 5:290097/149‑1 (MQ=255) aGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCtt < 5:324705/149‑1 (MQ=255) acgatgAGTTCTCCAGCCTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTg > 2:212453/6‑149 (MQ=255) ggAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCt > 7:192752/1‑149 (MQ=255) ggAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCt > 6:86656/1‑149 (MQ=255) aGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGaa < 1:339321/133‑1 (MQ=255) aGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGaa > 2:339321/1‑133 (MQ=255) aGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTg < 5:86656/149‑1 (MQ=255) ttcttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGc < 8:192752/149‑1 (MQ=255) ttcAGGCTGTAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGc < 7:297970/132‑1 (MQ=255) ttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGc > 8:297970/1‑132 (MQ=255) ttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTg > 2:145505/1‑149 (MQ=255) ttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTg > 8:290018/1‑149 (MQ=255) | GCCAGTCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTT‑GCG‑GTTGAGAATGGTGGGGAACAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGCGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTG > NC_002947/4807102‑4807393 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |