New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1844134 =	0 (0.000)	39 (1.300)	33/280	0.1	77.2%	coding (660/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	= 2179376	23 (0.760)					intergenic (+175/+93)	PP_1931/PP_5486	hypothetical protein/hypothetical protein

CAGCCTGTTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1844278‑1844134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTGG  <  NC_002947/2179376‑2179232                                                                                                                                                                                                                                                                                                    CAGCCTGTTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAG                                                                                                                                                >  5:132376/1‑148         TGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGT                                                                                                                                         <  8:56866/147‑1         TGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGT                                                                                                                                         <  2:131296/147‑1             GATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAA                                                                                                                                     >  7:10071/1‑147             GATCCTCGCCTGCCTGGCACTCAGCCGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGCACGGCCACATCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAA                                                                                                                                     >  6:15039/1‑147                  TCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGC                                                                                                                               <  5:28188/148‑1                  TCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGC                                                                                                                               <  5:168593/148‑1                          CTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCG                                                                                                                       >  8:15342/1‑148                           TGGCACTCAGCGGCCTGTTGGAGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCAGGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGT                                                                                                                      <  4:156947/148‑1                               ACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAA                                                                                                                  >  7:42798/1‑148                                      GGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCA                                                                                                           <  2:162360/148‑1                                                    GCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGGGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGG                                                                                             <  6:133529/148‑1                                                             CCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAA                                                                                    >  2:10597/1‑148                                                                 ACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGG                                                                                <  1:13375/148‑1                                                                 ACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTG                                                                                 >  7:16376/1‑147                                                                    ATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGG                                                                                >  5:122870/1‑145                                                                       AACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAA                                                                          >  4:41207/1‑148                                                                       AACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAA                                                                          >  8:22076/1‑148                                                                            CCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCCAGGACGTCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGC                                                                     <  5:69432/148‑1                                                                             CCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCG                                                                    >  7:95931/1‑148                                                                               CATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTG                                                                  <  6:132376/148‑1                                                                                ATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGG                                                                 >  5:166533/1‑148                                                                                       GCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGATATGCGTTGAACGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGCTTTAGC                                                           >  5:64119/1‑147                                                                                                      TCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTG                                           >  4:129740/1‑148                                                                                                       CAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGG                                          <  7:15342/148‑1                                                                                                          TCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGC                                       >  8:63338/1‑148                                                                                                             GCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGC                                     <  8:42798/147‑1                                                                                                                   GGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGTGCGCAGGGATCTAGAGAGTCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGC                              <  6:122870/148‑1                                                                                                                   GGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGC                              <  6:36294/148‑1                                                                                                                   GGACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGG                               >  1:105959/1‑147                                                                                                                     ACGGCCACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGA                            <  3:119088/148‑1                                                                                                                           ACCTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAG                      <  1:50456/148‑1                                                                                                                             CTCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCG                             >  4:46207/1‑139                                                                                                                              TCGAAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGA                            <  3:46207/139‑1                                                                                                                                 AAGAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGTGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTT                 <  5:15039/147‑1                                                                                                                                   GAACGCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCT               >  7:53445/1‑147                                                                                                                                       GCCTGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGG          >  5:157089/1‑148                                                                                                                                         CTGCCGACCCAGGCTGTGTGAAAACACGCGAAAGGCGGTGAAGGTCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCATATCGCCGTGCTGGGGCGCATGTGTCGATGTGAGTCGTTCTTGAGGTC        <  7:125120/148‑1                                                                                                                                          TGCCGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCT       >  5:57354/1‑148                                                                                                                                             CGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTT    <  8:10071/148‑1                                                                                                                                             CGACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTT    <  5:166327/148‑1                                                                                                                                               ACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTGG  <  1:84079/148‑1                                                                                                                                               ACCCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTGG  >  7:52361/1‑148                                                                                                                                                                                                                                                                                                    CAGCCTGTTGCTGATCCTCGCCTGCCTGGCACTCAGCGGCCTGTTGGCGCTGCGCATGAGCCGCACCATCAACGACCCCATCGAACGCATCAAGCACGCGGTCAATCAGCTCAAGGACGGCCACCTCGAAGAACGCCTGCCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1844278‑1844134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaccCAGGCTGTGTGAAAACACGCGAAATGCGTTGAAGGGCGCAGGGATCTAGAGAGGCTTGCCAAACTGGCAAGAAATTGCGTGGTTTAGCTCAAATCGCCGTGCTGGGGCGCATGTGGCGATGTGAGTCGTTCTTGAGGTCTTTTGG  <  NC_002947/2179376‑2179232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.