| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 0 (0.000) | 19 (0.620) +GCC |
17/284 | 0.8 | 100% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 0 (0.000) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGC > NC_002947/5555465‑5555756 | actgtgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCg > 3:143964‑M2/145‑147 (MQ=255) tgcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaacggccgcctagcggccCCCGCAAt > 1:2982‑M2/141‑148 (MQ=255) gcaggaaattcaggtcggcctgggcagcgattagtcgggcggacatgagcaactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAAtt < 6:91664‑M2/9‑1 (MQ=255) cagcgattagtcgggcggacatgagcaactccttttgtcatgtggcgccgacagcatagcaacaccgctccggtgtgggagcggccttgggtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTgg < 1:62778‑M2/33‑1 (MQ=255) cgggcggacatgagcaactccttttgtcttgtgtcgacgacagcatagcaacaccgcgaaggggggggagcggccttgttgcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGc < 6:101380‑M2/44‑1 (MQ=255) caactccttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtagcgcaagggccgcatagcggccCCGGCAATTTCCGCGGGTTTGCAACAAAACTGGGGCTGCGATGCCGCCCGttggcgcc > 7:160393‑M2/91‑146 (MQ=255) ttttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcgaccCCGGCAATTTCCGCGTGTATGCAACAAAc > 2:116713‑M2/84‑112 (MQ=255) tttgtcatgtgtcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcgaccCCGGCAATTTCCGCGTGTATGCAACAAAcc < 1:116713‑M2/30‑1 (MQ=255) tgtggcgccgacagcatagcaacaccgctcaggtgtgggagcggccttgggtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAg < 4:36604‑M2/73‑1 (MQ=255) tagcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTcgcg > 8:117927‑M2/60‑115 (MQ=255) agcaacaccgctcaggtgtgggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGa < 7:117927‑M2/57‑1 (MQ=255) gggagcggccttgtgtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAgg < 2:2982‑M2/108‑1 (MQ=255) gcggccttgtggcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGGGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgc < 7:88904‑M2/113‑1 (MQ=255) gcggccttgggtcgcgaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGgc < 8:160393‑M2/113‑1 (MQ=255) ggcgctaagggcccgcatcggggccCCGCAAATTTCCGCGTGGAGCCAACAACCCGGGGGCTGCTAGGCAGCCCGTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGa < 1:169177‑M2/123‑1 (MQ=255) gaaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAgg > 4:40016‑M2/21‑128 (MQ=255) aaagggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGc < 3:40016‑M2/109‑1 (MQ=255) gggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGa < 7:138847‑M2/132‑1 (MQ=255) ggccgcatagcggccCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCATTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCTCAGGCTGGCGCGCAGCTGAGCCCCCAGa > 8:77503‑M2/16‑147 (MQ=255) cccCCGGCAATTTCCGCGGGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCt < 8:97310‑M2/145‑1 (MQ=255) ccGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTg > 1:128877/1‑147 (MQ=255) ccGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGc < 4:143964/148‑1 (MQ=255) | GTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGCGCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCTTGC > NC_002947/5555465‑5555756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |