| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 87.2% | 109.2 / 10.7 | 39 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base A (16/18); total (18/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCC > NC_002947/278597‑278876 | gTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑a‑aa > 4:301593/1‑148 (MQ=255) tCGCTACAGCTGATCGCGACTGTCGTTTGCTGGTCCGGTGGTCCGGTATATATACCCTAATTATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑a‑aac < 8:251894/149‑3 (MQ=255) cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCTTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑a‑aac < 2:218266/148‑3 (MQ=255) cGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑A‑A‑acc > 5:364816/1‑149 (MQ=255) tACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGAATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGc > 5:278924/1‑149 (MQ=255) tACAGCTGATAGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACACTAATGATTTATAAAATTTTT‑ATGAAATAACTTTTTGGAATATTTATAGAAGGGGTATTTGTTACAGAGGTGCCTGGCTCTTCGCGGT‑T‑a‑aaaacga > 5:102206/1‑143 (MQ=255) aTCGCGACAGACGTGTGCTGGTCCGGTGGTCCTGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTaca < 5:243565/148‑1 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTacaca < 5:197516/149‑1 (MQ=255) gcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTacacac < 6:364816/148‑1 (MQ=255) cgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACAt < 5:86282/149‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 6:336782/147‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCCCGACTACAAACAAGCCTCAAGATAtgtg > 4:25586/1‑148 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTGATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTATTCGCGGG‑TAA‑A‑CCAGATCATAAACACATGCCTCAAGATAtgtg > 1:80848/1‑148 (MQ=255) gtggtccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGGACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTa < 4:200739/121‑1 (MQ=255) gtggtccggtATATATACCCTAATGATTTATAAAATTTTT‑ATGGACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTa > 3:200739/1‑121 (MQ=255) cggtATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGAA‑A‑A‑CACGCTCCTACACACATGCCTCAAGATATGTGCACTGTAGGAGc > 8:197647/1‑149 (MQ=255) tctataCCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGt < 2:311756/146‑1 (MQ=255) cccTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑ACCGCTACTACACACATTCCTAAAGATATGTGCACTGTATGATCGGGTTTAcacc > 5:9926/1‑146 (MQ=255) ccTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc < 2:80848/149‑1 (MQ=255) tAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCAGCTCCTACACACATTCCTCAAGATCTGTGCACTGTAGGAGAGGGTTTACAcgcg > 3:261026/1‑148 (MQ=255) aaTGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg > 5:256858/1‑136 (MQ=255) aaTGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 6:256858/136‑1 (MQ=255) aTGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGGGCACTGTAGGAGCGGGTTTACCCGCGaaa < 3:301593/149‑1 (MQ=255) tttATAAAATTTTT‑ATGAACTAACTTTTTGTAATATTTATCCAAGGGGGATTTGTTACAGAGGGGCGGGGCTCTTCGCGGG‑TAA‑A‑CCGGCTCAAACACACATGCCTCAAGATCTGTGCACTGTAGCACCGGGTTTACCCGCGAAAGGGc < 6:278924/149‑1 (MQ=255) taAAATTTTT‑ATGACCTAACTTTTTGGATTATTTATAGAAGGGGGATTTGTTACAGCGGTGCCGGGCTCTGCGCGGG‑T‑ACA‑CCCGCTCCTACCCACATCCCTCACGATCTGTGCACGGTCGGAGCGGGTTTACCCGCGAAAGGGCCGGa < 6:326843/149‑1 (MQ=255) tt‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGtt > 6:329674/1‑148 (MQ=255) gAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGGCGGAACAGGTTTACTc > 2:332976/1‑149 (MQ=255) ctaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 2:122688/149‑1 (MQ=255) taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCGGCTCCAACACACATGCCTCAATATCTGTGCACTTTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAg < 4:140069/149‑1 (MQ=39) aaatttttttTAATTTTTATAGATGGGGTTTTTGTTACAGCGGGGCCGGGCTCTGCGCTGT‑T‑A‑ACCCCGCTCCTACACACTGGCCACAAGTTGTGTGCATTGTTGGAGGGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAg < 6:250429/145‑1 (MQ=255) actTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACCTGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGc > 8:283288/1‑149 (MQ=255) ctTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc < 7:283288/149‑1 (MQ=255) atTTATACAAGGGGCATTTGTAACAGAGGTGCCGGGCTCTTCGCGGG‑A‑A‑ACCCCGCTCCAACACACATGCCCCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAg < 3:25586/149‑1 (MQ=38) gggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCaa < 6:398836/149‑1 (MQ=255) tccAGAGGTGCCGGGCTCTGCGCGGG‑TAA‑A‑CCCCCTCCTACACACATGCCTCACGATCTGTGCATTTTAGTAGGGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 6:9926/146‑1 (MQ=255) tACATAGGTGCCGGGCTCTTCGAGGG‑TAA‑A‑CCCGCTCCTACACACTTGCCTCAAGTTCTGTGCACTGTAGTAGGGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGcc < 7:197647/148‑1 (MQ=255) cAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc > 4:127324/1‑82 (MQ=255) cAGAGGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc < 3:127324/82‑1 (MQ=255) agGTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACCCATGCCTCAAGATCTGTGCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTAAGAGCCGGCCGCAGTCCCGAGGAACTTGCGCAAGACCTGCCGCGTAc > 8:188152/1‑149 (MQ=38) gTGCCGGGCTCTTCGCGGG‑TAA‑A‑CCCCCGCCGACCCCCCAGGCGCAAGCTCGGTTGCCGGGAGGGGCGGGGTTTCCCCCGCAAGGGCCGGGACCCGGTTACTCCGCGGCCGCCCGCCCGCGGAACTTGCGCAAGAAAGGCCCCGTACg > 2:313160/1‑148 (MQ=255) gggCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTATGAGCGGGTTTACCCGCGAAAGGGCCGGAACACGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc > 8:340564/1‑149 (MQ=255) gggCTCTTCGCGGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc > 5:132963/1‑149 (MQ=255) ggCTCTTCGCGGG‑TAA‑A‑ACCGCGACTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACACGTTTACTCGGATGCCCCAGTCCCGAGGAACTTGCGGAAGAACTGCCGCGTACGCGcttcc > 8:257053/1‑149 (MQ=38) | GTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTT‑ATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGG‑T‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCC > NC_002947/278597‑278876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |