New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 1844134 =3 (0.050)69 (1.080) 59/270 0.1 80.3% coding (660/2754 nt) gacS sensor protein GacS
?NC_002947 = 2179376 31 (0.490)intergenic (+175/+93) PP_1931/PP_5486 hypothetical protein/hypothetical protein

Only 100 of 137 total aligned reads displayed.

TGTTCTGGATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGCTGG  >  NC_002947/1843986‑1844279
                                                                                                                                                    |                                                                                                                                                 
tgcccaaaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgg                                                                                                                                                   >  3:195554‑M1/149‑149 (MQ=255)
 gcccaaaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctggg                                                                                                                                                  <  6:93454‑M1/2‑1 (MQ=255)
  ttCTGGATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCGATGGT                                                                                                                                                 >  4:204017‑M1/1‑149 (MQ=255)
  cccaaaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGt                                                                                                                                                 <  4:147298‑M1/3‑1 (MQ=255)
  cccaaaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGt                                                                                                                                                 >  8:157603‑M1/147‑149 (MQ=255)
   ccaaaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTc                                                                                                                                                <  8:341525‑M1/4‑1 (MQ=255)
     aggaTTTCGACTGGTTCCAGGTGCTGGCGCACGTCTTCGGGGGCCTGGTCGATGCTGTCTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTC                                                                                                                                                <  8:348217‑M1/146‑1 (MQ=255)
      aaagacctcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGc                                                                                                                                             >  6:41635‑M1/143‑149 (MQ=255)
       gATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcaga                                                                                                                                            <  6:54060‑M1/149‑5 (MQ=255)
       gATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcag                                                                                                                                             <  4:3983‑M1/148‑4 (MQ=255)
       gATTTCGATGGTTTCCAGGTGCTGGCGCACGTCTTCGGTTGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCca                                                                                                                                              <  4:75102‑M1/147‑3 (MQ=255)
            cGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgt                                                                                                                                        <  6:149546‑M1/148‑9 (MQ=255)
             tcaagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcgtctctagatccctgcgcccttcaccgcaggtcgcgtgtgttcgcacagcctgGGTCGGCAGGCgtg                                                                                                                                      <  8:282737‑M1/14‑2 (MQ=255)
             gATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgt                                                                                                                                      <  8:26895‑M1/149‑11 (MQ=255)
              caagaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGttc                                                                                                                                     <  5:217853‑M1/15‑1 (MQ=255)
               aagaacgactcacatcgccacatgcgcccgagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGttc                                                                                                                                     >  6:335816‑M1/134‑148 (MQ=255)
                agaacgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGttctt                                                                                                                                   <  6:165389‑M1/17‑1 (MQ=255)
                    cgactcacatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAg                                                                                                                               >  5:93454‑M1/129‑149 (MQ=255)
                    cgactcacatagccacatgctccccagcacggcgatttgagctaaaccacgcaatttcttgccaggttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcccgGGTCGGCAGGCGTTCTTCGAg                                                                                                                               >  5:345981‑M1/129‑149 (MQ=255)
                          acatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGcc                                                                                                                         <  5:390013‑M1/27‑1 (MQ=255)
                          acatcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGcc                                                                                                                         <  1:258155‑M1/27‑1 (MQ=255)
                            atcgccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGt                                                                                                                       <  1:348984‑M1/29‑1 (MQ=255)
                               gcgcACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgt                                                                                                                    <  7:308786‑M1/149‑29 (MQ=255)
                                ccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCtt                                                                                                                   <  6:332486‑M1/33‑1 (MQ=255)
                                ccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCtt                                                                                                                   >  5:165389‑M1/117‑149 (MQ=255)
                                ccacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcacccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCtt                                                                                                                   >  8:197187‑M1/117‑149 (MQ=255)
                                 cacatgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCtt                                                                                                                   <  7:22376‑M1/33‑1 (MQ=255)
                                   catgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAg                                                                                                                >  8:22376‑M1/114‑149 (MQ=255)
                                    atgcgccccagcacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGc                                                                                                               >  4:118351‑M1/113‑149 (MQ=255)
                                          cGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttc                                                                                                           <  5:78387‑M1/147‑38 (MQ=255)
                                               cacggcgatttgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACcgc                                                                                                    <  7:70504‑M1/48‑1 (MQ=255)
                                                 cTGGTCGATGCTGTGTTGCAGTTCTTCGAGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGATGACCATGGTCcagactgtgtgaaaacgcacgcggttgtctaaccttatggtcgtcg                                                                                                  >  1:224147‑M1/1‑103 (MQ=255)
                                                  tGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgt                                                                                                 >  6:32154‑M1/1‑102 (MQ=255)
                                                       gATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccg                                                                                            >  2:249480‑M1/1‑97 (MQ=255)
                                                       gATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgt                                                                                                 >  4:196556‑M1/1‑97 (MQ=255)
                                                         tgagctaaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGAt                                                                                           >  1:137136‑M1/92‑148 (MQ=255)
                                                            tgtgTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggg                                                                                        >  8:20694‑M1/1‑92 (MQ=255)
                                                               aaaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTc                                                                                     <  2:297484‑M1/63‑1 (MQ=255)
                                                                aaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGa                                                                                                                                <  3:301034‑M1/20‑1 (MQ=255)
                                                                aaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGa                                                                                                                                >  4:301034‑M1/85‑104 (MQ=255)
                                                                aaccacgcaatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTc                                                                                     >  2:71224‑M1/85‑147 (MQ=255)
                                                                 tGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaa                                                                                   <  1:249480‑M1/148‑62 (MQ=255)
                                                                     gTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtgg                                                                                         <  7:79700‑M1/138‑56 (MQ=255)
                                                                       caatttcttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTc                                                                            >  2:111347‑M1/78‑149 (MQ=255)
                                                                              ttgccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATg                                                                     <  5:379206‑M1/79‑1 (MQ=255)
                                                                                gccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCTTTCGATGGGGTCGTTGAt                                                                      >  5:332486‑M1/69‑146 (MQ=255)
                                                                                gccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATg                                                                     >  6:379206‑M1/69‑147 (MQ=255)
                                                                                gccagtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGt                                                                   <  7:287544‑M1/81‑1 (MQ=255)
                                                                                  aTTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatc                                                                  >  6:294406‑M1/1‑70 (MQ=255)
                                                                                    gtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCgg                                                               >  7:4174‑M1/65‑149 (MQ=255)
                                                                                    gtttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCgg                                                               <  1:150140‑M1/85‑1 (MQ=255)
                                                                                     tttggcaagcctctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGc                                                              >  8:103981‑M1/64‑149 (MQ=255)
                                                                                        cAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtg                                                           >  2:328417‑M1/1‑64 (MQ=255)
                                                                                        cAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggt                                                            >  6:209666‑M1/1‑64 (MQ=255)
                                                                                        cAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggt                                                            >  3:224045‑M1/1‑64 (MQ=255)
                                                                                        cAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaag                                                              >  5:30663‑M1/1‑64 (MQ=255)
                                                                                        cAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaag                                                              <  6:30663‑M1/146‑83 (MQ=255)
                                                                                          gggTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtgcggacaatcatgaagcgattcatcgaaggtgag                                                         >  2:177365‑M1/1‑62 (MQ=255)
                                                                                          aagcctctctagatccctgcgcccttcaacgcattttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATg                                                         <  1:58978‑M1/91‑1 (MQ=255)
                                                                                           ggTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgagg                                                        >  1:125763‑M1/1‑61 (MQ=255)
                                                                                                tctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTg                                                                                                                  <  8:50314‑M1/34‑1 (MQ=255)
                                                                                                tctctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTg                                                                                                                  >  7:50314‑M1/53‑86 (MQ=255)
                                                                                                  tctagatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAgc                                                   >  4:379175‑M1/51‑147 (MQ=255)
                                                                                                     agatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCa                                               <  2:13154‑M1/101‑1 (MQ=255)
                                                                                                      gatccctgcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCaa                                              >  1:13154‑M1/47‑148 (MQ=255)
                                                                                                         ccctgcgcccttcaacgcatttcgcgtgttttcacacagactgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACAGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAgg                                          <  8:53555‑M1/106‑1 (MQ=255)
                                                                                                             gcgcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATgggg                                                                              <  1:178501‑M1/70‑1 (MQ=255)
                                                                                                               gcccttcaacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCt                                     <  6:202467‑M1/111‑1 (MQ=255)
                                                                                                                     caacgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGc                               <  4:211468‑M1/117‑1 (MQ=255)
                                                                                                                      ggCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccgg                             <  5:32154‑M1/149‑116 (MQ=255)
                                                                                                                      ggCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccg                              <  4:181981‑M1/148‑115 (MQ=255)
                                                                                                                       gCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccg                              >  2:199258‑M1/1‑33 (MQ=255)
                                                                                                                        cgcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCcagg                           >  2:150140‑M1/29‑149 (MQ=255)
                                                                                                                         gcatttcgcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCATCTCCAACAGGCAGCTGAGTGCcagg                           <  4:213740‑M1/121‑1 (MQ=255)
                                                                                                                         cAGTTCGGCCAGCTCATGGCTGCCCATGGTCcagacggtgtgaaaacgcccgcggttgtctaaccttctgggcgtcgtgaccggggggacaatcatgaagcgattcatcgaagttgagtctcgaactctggttacattgctgccggagt                          <  2:224147‑M1/149‑119 (MQ=255)
                                                                                                                            ttCGTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcc                       <  4:224045‑M1/149‑122 (MQ=255)
                                                                                                                            atcGTCCAGCTCATGGCTGCCCAAGGTCaagactgtgtgaaaacgcccgcggttgtctaacattctcgtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacatttctgccggagtgcc                       >  8:111803‑M1/2‑28 (MQ=255)
                                                                                                                               gTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctg                     <  2:317384‑M1/148‑124 (MQ=255)
                                                                                                                               gTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctg                     >  2:110894‑M1/1‑25 (MQ=255)
                                                                                                                               gTCCAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtagtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattg                                    >  2:134269‑M1/1‑25 (MQ=255)
                                                                                                                                gcgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAg                   >  6:36241‑M1/21‑149 (MQ=255)
                                                                                                                                 cgtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAgg                  >  2:58978‑M1/20‑149 (MQ=255)
                                                                                                                                 ccAGCTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggac                  >  3:210192‑M1/1‑23 (MQ=255)
                                                                                                                                  gtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTg                                                                  <  7:189619‑M1/82‑1 (MQ=255)
                                                                                                                                  gtgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTg                                                                  >  8:189619‑M1/19‑100 (MQ=255)
                                                                                                                                   tgttttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGAt                <  3:49018‑M1/132‑1 (MQ=255)
                                                                                                                                     cTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgact              <  5:140103‑M1/149‑131 (MQ=255)
                                                                                                                                     cTCATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgact              <  7:193473‑M1/149‑131 (MQ=255)
                                                                                                                                      tttcacacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAg             <  2:311673‑M1/135‑1 (MQ=255)
                                                                                                                                       cATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcttcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgactat            >  7:164611‑M1/1‑17 (MQ=255)
                                                                                                                                       cATGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcacgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgactac            >  6:165106‑M1/1‑17 (MQ=255)
                                                                                                                                        aTGGCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtgaggctcgaacgcaggttacattgctgccggagtgcctggacgactacg           >  2:125811‑M1/1‑16 (MQ=255)
                                                                                                                                          acacagcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCaa          <  6:103349‑M1/138‑1 (MQ=255)
                                                                                                                                           gCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtg                                                           <  4:193549‑M1/98‑86 (MQ=255)
                                                                                                                                           gCTGCCCATGGTCcagactgtgtgaaaacgcccgcggttgtctaaccttctggtcgtcgtgaccgtggggacaatcatgaagcgattcatcgaaggtg                                                           >  3:193549‑M1/1‑13 (MQ=255)
                                                                                                                                              agcctgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGc     <  1:106631‑M1/143‑1 (MQ=255)
                                                                                                                                                ccATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGCTg   <  8:39692/149‑1 (MQ=255)
                                                                                                                                                ccATGGTAaagactgtgtgaaaacgcccgcggttgtctaaccttctgctcgtcgtgaccgtggggacaatcatgaagcgattcatcgaagctgaggctcgaacgcagcttacaatgctcccggagtgcctggacgactacgtcacctat   >  2:124254‑M1/1‑8 (MQ=255)
                                                                                                                                                 ctgGGTCGGCAGGCGTTCTTCGAGGTCGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGCTgg  <  6:288475‑M1/146‑1 (MQ=255)
                                                                                                                                                  tgGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCg                                                                           <  3:386655‑M1/73‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                 
TGTTCTGGATTTCGATGGTTTCCAGGTTCTGGCGCACGTCTTCGGTGGCCTGGTCGATGCTGTGTTGCAGTTCTTCGTGGGCATTCTGCAGGGTTTCGGCCATGCGGTTGATGCCGTGGGCCAGTTCGTCCAGCTCATGGCTGCCCATGGTCGGCAGGCGTTCTTCGAGGTGGCCGTCCTTGAGCTGATTGACCGCGTGCTTGATGCGTTCGATGGGGTCGTTGATGGTGCGGCTCATGCGCAGCGCCAACAGGCCGCTGAGTGCCAGGCAGGCGAGGATCAGCAACAGGCTGG  >  NC_002947/1843986‑1844279

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.