| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 4,586,030 | 2 bp→TC | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,586,030 | 0 | C | T | 100.0% | 87.3 / NA | 28 | intergenic (+113/+102) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (4/24); total (4/24) | |||||||||||
| * | NC_002947 | 4,586,031 | 0 | T | C | 100.0% | 86.5 / NA | 28 | intergenic (+114/+101) | PP_4061/PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (4/24); total (4/24) | |||||||||||
GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGG‑A‑C‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAG > NC_002947/4585887‑4586113 || gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGC‑gg < 4:24654/149‑1 (MQ=255)gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGC‑gg < 2:216030/149‑1 (MQ=255)gccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGC‑gg < 3:333732/149‑1 (MQ=255) ccAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAAc > 5:388234/1‑149 (MQ=255) ccAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAAc < 1:82253/149‑1 (MQ=255) ccAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACAGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAAc < 5:239922/149‑1 (MQ=255) aGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCt < 3:141634/149‑1 (MQ=255) gCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTc < 4:156280/149‑1 (MQ=255) ccAACGGTGAACGCGTAAGGGGAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGTTCGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCt < 1:309184/149‑1 (MQ=255) aCCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTa < 4:117032/149‑1 (MQ=255) gTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCGAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAg < 1:367465/149‑1 (MQ=39) aGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑A‑c < 2:224307/149‑1 (MQ=255) ggCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑A‑cc < 4:237868/149‑2 (MQ=255) ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAAcc < 3:142829/129‑1 (MQ=255) ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAAcc > 4:142829/1‑129 (MQ=255) aaGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑A‑ccgtgc < 8:42988/148‑6 (MQ=39) aaGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑A‑ccgtg < 8:218259/147‑5 (MQ=39) tAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCt < 1:260215/149‑1 (MQ=39) aCCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTCGAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCCCTCCTACCACGG‑ACC‑GTGCCGGCCTTGAATg‑cggc > 1:75815/1‑149 (MQ=255) gCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAg < 4:133924/149‑1 (MQ=39) cgcTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑G‑CAGCGCC‑GCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGt < 6:388234/148‑1 (MQ=14) cgcTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGt < 7:12666/148‑1 (MQ=38) ctgctCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTa < 6:175594/149‑1 (MQ=38) cATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTAccc < 8:135314/146‑1 (MQ=38) cATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCcgc < 8:22222/148‑1 (MQ=38) aaGGGT‑GTGGATGCCCGGGG‑‑GCTTGGCAAGGTGTAGATCTTGCATTGATGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCCGGGCC‑C‑GTGCCGGCCTTTAATG‑CGGCGCGGCCCCGGGTAGGAGCGGGTTTACCCGCGAagag < 2:75815/148‑1 (MQ=21) cTTGCATTTTTCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAaga < 6:111342/109‑1 (MQ=21) cTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGG‑ACC‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAaga > 5:111342/1‑109 (MQ=25) || GCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTT‑GAGGATGACCGGGT‑‑GCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑GGTAAACCCGCTCCTACCAGGG‑A‑C‑GTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAG > NC_002947/4585887‑4586113 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |